BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0100800 Os08g0100800|AK106602
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10820.2 | chr1:3601437-3604650 REVERSE LENGTH=259 115 3e-26
AT1G60670.2 | chr1:22344099-22347140 FORWARD LENGTH=255 111 4e-25
AT3G07565.4 | chr3:2413823-2415872 FORWARD LENGTH=269 102 2e-22
AT1G68160.1 | chr1:25546168-25548625 REVERSE LENGTH=274 87 1e-17
AT2G43470.1 | chr2:18049944-18051218 REVERSE LENGTH=211 49 3e-06
>AT1G10820.2 | chr1:3601437-3604650 REVERSE LENGTH=259
Length = 258
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 101/205 (49%), Gaps = 19/205 (9%)
Query: 69 DWPHHDLAILNDGLLRYAHEPNIIKYTKIAAMLPTRTIRDVALRCRWTKDNESRRGKLDQ 128
DW + +L +GL + EP I KY KIAA LP +T+RDVALRCRW RR + D
Sbjct: 57 DWSVEEQYVLENGLAKLKDEPKISKYVKIAATLPDKTVRDVALRCRWM--TRKRRKREDN 114
Query: 129 VYTGKM-IRGLKDNMVSSTLAANIQIQNP----NNMVPFSISMHYQGQNSLLHKEVPVLD 183
+ R + D + +N+ QN NNM S ++G L
Sbjct: 115 NAAKNISTRKVVDTSPELNMLSNVPQQNALYVLNNMC-HSTRTPFEG-----------LS 162
Query: 184 SATQHLLEENNQLLSQIAENIETFKTVENMDLFLRTNNNIRTVLKRMSETPGIMGQMPPL 243
A LL++N Q SQI+ N+ K +N+ LF + NNI +L M E PGIM +MP L
Sbjct: 163 DAVMDLLQQNAQAFSQISYNLSACKLQDNISLFHQARNNISAILTDMKEMPGIMSRMPAL 222
Query: 244 PVPVNEGSLNTLLQMDRMVGAYGIP 268
PV +N+ + LL +Y IP
Sbjct: 223 PVSINDDLASNLLSSTTQPISYNIP 247
>AT1G60670.2 | chr1:22344099-22347140 FORWARD LENGTH=255
Length = 254
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 101/205 (49%), Gaps = 19/205 (9%)
Query: 69 DWPHHDLAILNDGLLRYAHEPNIIKYTKIAAMLPTRTIRDVALRCRWTKDNESRRGKLDQ 128
DW + IL GL ++ EP + KY KIAA LP +++RDVA+RC+W R+G+
Sbjct: 53 DWSVEEQYILEKGLSKFKDEPQVTKYVKIAATLPDKSVRDVAMRCKWMTQKR-RKGEEHS 111
Query: 129 VYTGKMIRGLKD-----NMVSSTLAANIQIQNPNNMVPFSISMHYQGQNSLLHKEVPVLD 183
T R + D NM S+ N + +M++ Q++ + E L
Sbjct: 112 TGTKVSYRKVVDLPPKLNMFSTEPQQNA-----------TYAMNHMCQSARMPFEG--LS 158
Query: 184 SATQHLLEENNQLLSQIAENIETFKTVENMDLFLRTNNNIRTVLKRMSETPGIMGQMPPL 243
A L +N Q SQI+ N+ K +N+ LF NNI +L M E PGI+ +MPPL
Sbjct: 159 DAVMERLRQNAQAFSQISSNLSVCKPQDNVSLFYMARNNISAILNDMKEMPGIISRMPPL 218
Query: 244 PVPVNEGSLNTLLQMDRMVGAYGIP 268
PV +N ++L+ +Y IP
Sbjct: 219 PVSINNDLASSLVTSATQPRSYTIP 243
>AT3G07565.4 | chr3:2413823-2415872 FORWARD LENGTH=269
Length = 268
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 19/201 (9%)
Query: 69 DWPHHDLAILNDGLLRYAHEPNIIKYTKIAAMLPTRTIRDVALRCRW-TKDNESRRGKLD 127
DW + ++L D L++YA EP++ +Y KIA + +T+RDVALRCRW TK +R K D
Sbjct: 65 DWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENGKRRKED 124
Query: 128 ---QVYTGKMIRGLKDNMVSSTLAANIQIQNPNNMVPFSISMHYQGQNSLLHKEVPVLDS 184
+ K D+ S+ N+ P+ P M + + +K +
Sbjct: 125 HSSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPM---MPIDTDDGISYK---AIGG 178
Query: 185 ATQHLLEENNQLLSQIAENIETFKTV---------ENMDLFLRTNNNIRTVLKRMSETPG 235
+ LLE+N Q+ +Q++ N F+ EN+++ + +NI +L +++ P
Sbjct: 179 VSGDLLEQNAQMFNQLSTNFSAFQVNSTSTFHLLHENVNILCKARDNILAILNDLNDMPE 238
Query: 236 IMGQMPPLPVPVNEGSLNTLL 256
+M QMPPLPV +NE N++L
Sbjct: 239 VMKQMPPLPVKLNEELANSIL 259
>AT1G68160.1 | chr1:25546168-25548625 REVERSE LENGTH=274
Length = 273
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 61 KFVTCSPADWPHHDLAILNDGLLRYAHEPNIIKYTKIAAMLPTRTIRDVALRCRWTKDNE 120
K T ++W + + IL+ GL +Y P+I Y +I LP ++IRD+ALRCRW +
Sbjct: 71 KLDTSMVSEWSNEEQYILDAGLEKYKDMPSIDMYIQIGNTLPDKSIRDIALRCRWLRRKR 130
Query: 121 SRRGKLDQVYTGKMIRGLKDNMVSSTLAANIQIQNPNNMVPFSISMHYQGQNSLLHKEVP 180
+ +L+ G+ K V S+ ++I P+NM + S G ++ K++
Sbjct: 131 RKSEELN---CGRRASSSKGKQVESSSKSSIPSVLPHNMASYPFS----GPSTSTSKQIT 183
Query: 181 V--LDSATQHLLEENNQLLSQIAENIETFKTVENMDLFLRTNNNIRTVLKRMSETPGIMG 238
L S +L+E+N + SQI N+ ++K +N+DLF + NN+ T+ ++ PG+M
Sbjct: 184 SEDLSSYATNLIEQNVRAFSQIRANLSSYKAGDNLDLFRQARNNLITIQNEINNMPGLMN 243
Query: 239 QMPPLPVPVNE 249
+MPPLPV +N+
Sbjct: 244 KMPPLPVTIND 254
>AT2G43470.1 | chr2:18049944-18051218 REVERSE LENGTH=211
Length = 210
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 91 IIKYTKIAAMLPTRTIRDVALRCRWTKDNESRRGKLDQVYTGKMIRGLKDNMVSSTLAAN 150
+ +Y +I L +TIRDVA R RW + + + K + R + +V+ LA+
Sbjct: 53 VTRYLQILEFLQDKTIRDVAARSRWIYNKKIAKKKKEDHNGLGTTRVDNEEIVNMVLAS- 111
Query: 151 IQIQNPNNMVPFSISMHYQGQNSLLHKEVPVLDSATQHLLEENNQLLSQIAENIETFKTV 210
Q+ P+ + F S H +H E LL N Q +QI N+
Sbjct: 112 -QVYQPSQV--FQPSQHG------VHNE----------LLNHNKQWFNQIYANLTFLNLT 152
Query: 211 ENMDLFLRTNNNIRTVLKRMSETPGIMGQMPPLPVP 246
+N+DLF + NI+++LK ++E + P +P
Sbjct: 153 DNLDLFRKIRENIKSLLKDLNENVSETWKNMPSSLP 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,124,816
Number of extensions: 192911
Number of successful extensions: 658
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 5
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)