BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0694800 Os07g0694800|AK065595
         (394 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13610.1  | chr5:4383073-4384808 FORWARD LENGTH=403            380   e-106
AT1G69380.1  | chr1:26081729-26083431 REVERSE LENGTH=374          354   4e-98

>AT5G13610.1 | chr5:4383073-4384808 FORWARD LENGTH=403
          Length = 402

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/263 (71%), Positives = 216/263 (82%), Gaps = 2/263 (0%)

Query: 106 EDQSRL-VPVKAYFPCTSINLKSLQSQNSFNVIPPTSRATNYVVLRYYDVKGDPEGFKAG 164
           ED+++L +PV+AYF  TS++L+SL  QN  N IPPTSR TNYVVL++ +   DP     G
Sbjct: 114 EDEAKLSIPVRAYFFSTSVDLRSLIEQNKQNFIPPTSRMTNYVVLKFGN-HSDPTDTTRG 172

Query: 165 IIDESHCHYMVVFQYGSIVLFNVSDHEADGYLKIVEKHASGLLPEMRKDDYAVVEKPTLE 224
            I  S   YMVVF YGSIVLFNV +HE D YLK+VE+HASGLLPEMRKD+Y V E P L+
Sbjct: 173 RISGSESIYMVVFHYGSIVLFNVREHEVDEYLKVVERHASGLLPEMRKDEYEVRENPNLD 232

Query: 225 TWMQGGLDFIILRDLSIDGIRTIGSVLGQSIALDYYIRQVDGMVAEFTDINRGMEKTGTF 284
           TWM+ G DFI L+ L+ DGIRTIG VLGQSIALDYY RQVDGMVAEFT+INR +E TGTF
Sbjct: 233 TWMEVGRDFIRLQFLNTDGIRTIGCVLGQSIALDYYGRQVDGMVAEFTEINRQLEITGTF 292

Query: 285 TMERKKLFQLVGKANSNLADVILKLGLFERSDIAWKNANYAQIWEYLRDEYELTQRFGNL 344
           TM+RKKLFQLVGKAN  LADVILKLGLFERSDIAWK+A Y QIWE+LRDE+ELTQ F NL
Sbjct: 293 TMKRKKLFQLVGKANVILADVILKLGLFERSDIAWKDAKYGQIWEFLRDEFELTQSFANL 352

Query: 345 DFKLKFVEHNIRFLQEILQNRKS 367
           D+KLKFVEHN+RFLQEILQNRKS
Sbjct: 353 DYKLKFVEHNVRFLQEILQNRKS 375



>AT1G69380.1 | chr1:26081729-26083431 REVERSE LENGTH=374
          Length = 373

 Score =  354 bits (909), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 170/262 (64%), Positives = 212/262 (80%), Gaps = 8/262 (3%)

Query: 112 VPVKAYFPCTSINLKSLQSQNSFNVIPPTSRATNYVVLRYYDVKGDPEGFKAGIIDE--- 168
           +P+KAYF  TSI+LK++Q++N  NV+PPTSR+TNY+ L++ D    P G  +  +DE   
Sbjct: 87  IPIKAYFLSTSIDLKAMQAENLCNVVPPTSRSTNYIALKFSDFT--PSGIYS--LDERES 142

Query: 169 -SHCHYMVVFQYGSIVLFNVSDHEADGYLKIVEKHASGLLPEMRKDDYAVVEKPTLETWM 227
            S+C +MVVFQYGS +LFNV D++ D YL IV +HASGLL EMRKDDYAV EKP L   M
Sbjct: 143 VSNCKFMVVFQYGSAILFNVDDNDVDRYLDIVRRHASGLLTEMRKDDYAVKEKPLLIEEM 202

Query: 228 QGGLDFIILRDLSIDGIRTIGSVLGQSIALDYYIRQVDGMVAEFTDINRGMEKTGTFTME 287
           +GG D+I+L+ L  + IR IGSVLGQSIALDY + QV+ +V EF DINR M KTGTFTM 
Sbjct: 203 KGGPDYIVLKTLDTNSIRIIGSVLGQSIALDYSVSQVNKLVEEFADINRSMAKTGTFTMT 262

Query: 288 RKKLFQLVGKANSNLADVILKLGLFERSDIAWKNANYAQIWEYLRDEYELTQRFGNLDFK 347
           RKKLFQLVGKANSN+ADVILK+GLFERS+IAW+ A YAQI+EYLR+EYE++QRFG+LD+K
Sbjct: 263 RKKLFQLVGKANSNIADVILKVGLFERSEIAWREARYAQIYEYLREEYEISQRFGDLDYK 322

Query: 348 LKFVEHNIRFLQEILQNRKSDF 369
           LKF+EHNI FLQE++QNR+SD 
Sbjct: 323 LKFIEHNIHFLQEVMQNRQSDL 344



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,873,512
Number of extensions: 266799
Number of successful extensions: 551
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)