BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0693400 Os07g0693400|J033041E24
         (89 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08960.1  | chr3:2730405-2736762 REVERSE LENGTH=1011            91   1e-19

>AT3G08960.1 | chr3:2730405-2736762 REVERSE LENGTH=1011
          Length = 1010

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 47/54 (87%)

Query: 33  FLSRYFIYTAKDLEEWSENPESFHHEQNLVQWTEKQRPCAEALFIVIFENYREV 86
            + RYF+ TA DLEEW +NPESFHHEQ+++QWTEK RPCAEAL++V+FENY ++
Sbjct: 402 LVRRYFVLTASDLEEWYQNPESFHHEQDMIQWTEKLRPCAEALYMVLFENYSQL 455



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.137    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,209,781
Number of extensions: 79583
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 11,106,569
Length adjustment: 60
Effective length of query: 29
Effective length of database: 9,461,609
Effective search space: 274386661
Effective search space used: 274386661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)