BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0691300 Os07g0691300|AK069499
         (99 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10985.1  | chr3:3442776-3443108 FORWARD LENGTH=111             50   3e-07
AT5G01740.1  | chr5:280793-281281 FORWARD LENGTH=163               47   1e-06

>AT3G10985.1 | chr3:3442776-3443108 FORWARD LENGTH=111
          Length = 110

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 47/101 (46%), Gaps = 23/101 (22%)

Query: 2  MRLLTGCAXXXXXXXXXXXLSVHALPASDVVIAEGITGRYHDSYWVHAWTVGPGPNGDRV 61
          MR+LTG             LSV +      VIAEG       S W+HAWTV  G     +
Sbjct: 1  MRVLTGGVSPSSSSFEFVPLSVVSF--GSTVIAEGCDAATSIS-WIHAWTVANG-----I 52

Query: 62 ITHLREYLNTDLTVTRL-------------PPTRC--LWQS 87
          IT +REY NT LTVTR+             PP+ C  +W+S
Sbjct: 53 ITQVREYSNTSLTVTRIGNVVAGRRSAEIAPPSHCSSVWES 93



>AT5G01740.1 | chr5:280793-281281 FORWARD LENGTH=163
          Length = 162

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 1   MMRLLTGCAXXXXXXXXXXXLSVHALPASDVVIAEGITGRYHDSYWVHAWTVGPGPNGDR 60
           MMRLLTG                  +P  D VIAEG  G     YWVH W +  G     
Sbjct: 58  MMRLLTGEPPRQVSFRFEPSSVQVVVPGHDCVIAEGWEGSR--VYWVHVWKLKDG----- 110

Query: 61  VITHLREYLNTDLTVT 76
           V+T LREY NT LTVT
Sbjct: 111 VVTELREYFNTWLTVT 126



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,890,116
Number of extensions: 67331
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 99
Length of database: 11,106,569
Length adjustment: 69
Effective length of query: 30
Effective length of database: 9,214,865
Effective search space: 276445950
Effective search space used: 276445950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)