BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0686900 Os07g0686900|AK064838
(424 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10740.1 | chr3:3361031-3364573 REVERSE LENGTH=679 501 e-142
AT5G26120.1 | chr5:9121835-9125399 REVERSE LENGTH=675 468 e-132
>AT3G10740.1 | chr3:3361031-3364573 REVERSE LENGTH=679
Length = 678
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/422 (57%), Positives = 307/422 (72%), Gaps = 6/422 (1%)
Query: 1 GHGFRKDLASMLANLKPQFLKFPGGNYAMGNYLRNAFRWSETVGPWEERPGHFNDAWGYW 60
GHGFR DL M+A++KP+F++FPGG + G +L NAFRW ETVGPWEERPGHF D W YW
Sbjct: 244 GHGFRNDLFQMMADIKPRFIRFPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYW 303
Query: 61 TDDGLGFFEFLQLAEDLGASPVWVVNDGASQNEEVSTATIASLVKDVVDGIEFARGGPKT 120
TDDGLG FEF Q+AED+GA+P+WV N+G S N+EV TA+I V++ +DGIEFARG +
Sbjct: 304 TDDGLGHFEFFQMAEDIGAAPIWVFNNGISHNDEVETASIMPFVQEALDGIEFARGDANS 363
Query: 121 TWGSVRAAMGHPQPFNLDYVSIGNQECWMLYYRGNYQKFYSAIKAAYPDINVVSSCDKST 180
TWGSVRA MG +PF L YV+IGN++C YYRGNY FY AIK AYPDI ++S+CD S+
Sbjct: 364 TWGSVRAKMGRQEPFELKYVAIGNEDCGKTYYRGNYIVFYDAIKKAYPDIKIISNCDGSS 423
Query: 181 ISPSNPADLYDVHVYTSSSDMFSRTSMFDNTTRSGPKAIVSEYAVTGKDAGKGTXXXXXX 240
+PAD YD H+YTS+S++FS FD T+R GPKA VSEYAVTGKDAG G+
Sbjct: 424 HPLDHPADYYDYHIYTSASNLFSMYHQFDRTSRKGPKAFVSEYAVTGKDAGTGSLLASLA 483
Query: 241 XXXXXXXXXRNSDVVEMASCAPLFVNDNDRRWSPDAIVFNSWQNYGCPNYWMLHFFKDSC 300
+NSD+VEMAS APLFVN NDRRW+PDAIVFNS YG P+YW+ FF +S
Sbjct: 484 EAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESS 543
Query: 301 GATFHPSNIQISSYNQLVASAITWQNS-KDKSTYLKIKLVNFGNQAVNLSISVSGLDEGI 359
GAT S ++ +S LVASAI+W+N+ KD Y++IK VNFG + N+ + V+GLD +
Sbjct: 544 GATLLTSTLKGNS-TSLVASAISWKNNGKD---YIRIKAVNFGANSENMQVLVTGLDPNV 599
Query: 360 -KSSGSKKTVLTSSGPLDENSFQQPQKVAPVSSPVDNANEQMGVLVDPYSLTSFDLLLQP 418
+ SGSKKTVLTS+ +DENSF QP+KV P S ++ A E M V++ P+S +SFDLL +
Sbjct: 600 MRVSGSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKES 659
Query: 419 SK 420
+K
Sbjct: 660 AK 661
>AT5G26120.1 | chr5:9121835-9125399 REVERSE LENGTH=675
Length = 674
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/419 (54%), Positives = 292/419 (69%), Gaps = 8/419 (1%)
Query: 1 GHGFRKDLASMLANLKPQFLKFPGGNYAMGNYLRNAFRWSETVGPWEERPGHFNDAWGYW 60
GHGFR DL M+ +LKP+F++FPGG + G++L NAFRW ETV WEERPGH+ D W YW
Sbjct: 243 GHGFRNDLFQMMVDLKPRFIRFPGGCFVEGDWLGNAFRWKETVRAWEERPGHYGDVWKYW 302
Query: 61 TDDGLGFFEFLQLAEDLGASPVWVVNDGASQNEEVSTATIASLVKDVVDGIEFARGGPKT 120
TDDGLG FEF QLAEDLGASP+WV N+G S N++V T + V++ +DGIEFARG +
Sbjct: 303 TDDGLGHFEFFQLAEDLGASPIWVFNNGISHNDQVETKNVMPFVQEAIDGIEFARGDSNS 362
Query: 121 TWGSVRAAMGHPQPFNLDYVSIGNQECWMLYYRGNYQKFYSAIKAAYPDINVVSSCDKST 180
TWGSVRAAMGHP+PF L YV++GN++C+ YYRGNY +FY+AIK AYPDI ++S+CD S
Sbjct: 363 TWGSVRAAMGHPEPFELKYVAVGNEDCFKSYYRGNYLEFYNAIKKAYPDIKIISNCDASA 422
Query: 181 ISPSNPADLYDVHVYTSSSDMFSRTSMFDNTTRSGPKAIVSEYAVTGKDAGKGTXXXXXX 240
+PAD +D H+YT + D+FS++ FDNT R+GPKA VSEYAV DA G
Sbjct: 423 KPLDHPADYFDYHIYTLARDLFSKSHDFDNTPRNGPKAFVSEYAVNKADAKNGNLLAALG 482
Query: 241 XXXXXXXXXRNSDVVEMASCAPLFVNDNDRRWSPDAIVFNSWQNYGCPNYWMLHFFKDSC 300
+NSD+VEM S APLFVN NDRRW PDAIVFNS YG P+YW+ HFF +S
Sbjct: 483 EAAFLLGLEKNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESS 542
Query: 301 GATFHPSNIQISSYNQLVASAITWQ-NSKDKSTYLKIKLVNFGNQAVNLSISVSGLDEGI 359
GAT S ++ + + ASAI++Q N KD Y++IK VNFG Q+VNL ++V+GL
Sbjct: 543 GATLLNSTLK-GKTSSVEASAISFQTNGKD---YIQIKAVNFGEQSVNLKVAVTGL--MA 596
Query: 360 KSSGSKKTVLTSSGPLDENSFQQPQKVAPVSSPVD-NANEQMGVLVDPYSLTSFDLLLQ 417
K GSKK VLTS+ +DENSF P + P S ++ E + ++ P+S +SFDLL +
Sbjct: 597 KFYGSKKKVLTSASVMDENSFSNPNMIVPQESLLEMTEQEDLMFVLPPHSFSSFDLLTE 655
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,717,831
Number of extensions: 418680
Number of successful extensions: 906
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 2
Length of query: 424
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 323
Effective length of database: 8,337,553
Effective search space: 2693029619
Effective search space used: 2693029619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)