BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0684900 Os07g0684900|AK073232
(262 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298 126 9e-30
AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269 123 7e-29
AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379 94 8e-20
AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326 90 1e-18
AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351 60 1e-09
AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272 58 6e-09
AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261 58 6e-09
AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269 57 1e-08
AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293 56 2e-08
AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245 55 3e-08
AT3G11260.1 | chr3:3527606-3528263 FORWARD LENGTH=183 54 8e-08
AT5G05770.1 | chr5:1734487-1734855 FORWARD LENGTH=123 53 2e-07
AT1G46480.1 | chr1:17236903-17237953 REVERSE LENGTH=252 52 4e-07
AT1G20700.1 | chr1:7182558-7183866 FORWARD LENGTH=212 51 5e-07
>AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298
Length = 297
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 65/77 (84%), Gaps = 8/77 (10%)
Query: 5 HSPDRHA--------AAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLL 56
HSP RH+ + + EPVRSRW+PKPEQILILESIF+SGMVNPPK+ETVRIRK+L
Sbjct: 8 HSPTRHSRSPPSSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKML 67
Query: 57 ERFGAVGDANVFYWFQN 73
E+FGAVGDANVFYWFQN
Sbjct: 68 EKFGAVGDANVFYWFQN 84
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 52/66 (78%)
Query: 197 QPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYF 256
Q +TVFINGV TEV RG ID+++ FG+D++LVHS+G LP +E+G L+HSLQ GE+YF
Sbjct: 232 QQGAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHSLQHGEAYF 291
Query: 257 LVTRSS 262
LV R +
Sbjct: 292 LVPRQT 297
>AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269
Length = 268
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%), Gaps = 4/69 (5%)
Query: 5 HSPDRHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGD 64
HSP ++ + EPVR+RW+PKPEQILILESIFNSG VNPPKDETVRIRK+LE+FGAVGD
Sbjct: 8 HSP----SSTSTEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGD 63
Query: 65 ANVFYWFQN 73
ANVFYWFQN
Sbjct: 64 ANVFYWFQN 72
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%)
Query: 197 QPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYF 256
Q MTVFINGV EV +G ID+++MFG D +L+HS+G LP +E+G L+HSLQ G++YF
Sbjct: 203 QEGFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPTDEFGFLMHSLQHGQTYF 262
Query: 257 LVTRSS 262
LV R +
Sbjct: 263 LVPRQT 268
>AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379
Length = 378
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 45/54 (83%)
Query: 20 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
+ RW PKPEQI ILE+IFNSGMVNPP++E RIR L+ +G VGDANVFYWFQN
Sbjct: 53 KPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQN 106
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 199 ATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYFLV 258
A + VFIN + EV GP ++R FG++V+L++S G + +EYG+ LH LQ G SY+L+
Sbjct: 319 ARIRVFINEMELEVSSGPFNVRDAFGEEVVLINSAGQPIVTDEYGVALHPLQHGASYYLI 378
>AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326
Length = 325
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 20 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
+ RW PKPEQI ILESIFNSG +NPP++E RIR L+ +G +GDANVFYWFQN
Sbjct: 53 KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQN 106
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 198 PATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYFL 257
P MTVFIN + EV G ++++ FG D +L++S G + +E+G+ LQ G Y+L
Sbjct: 265 PVRMTVFINEMPIEVVSGLFNVKAAFGNDAVLINSFGQPILTDEFGVTYQPLQNGAIYYL 324
Query: 258 V 258
+
Sbjct: 325 I 325
>AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351
Length = 350
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 19 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
V SRW P P+Q+ +LE ++ G P D +I L R+G + NVFYWFQN
Sbjct: 73 VSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQN 127
>AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272
Length = 271
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 22 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
RW P PEQI LE ++ SG P ++ +I L ++G + NVFYWFQN
Sbjct: 61 RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQN 112
>AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261
Length = 260
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 15 AGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
AG SRW P +QI +LE+++ G+ P D+ +I L +G + NVFYWFQN
Sbjct: 7 AGTASSSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQN 65
>AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269
Length = 268
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 20 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
R RWTP P Q+ ILE IF+ G P K + I + L + G + + NV+ WFQN
Sbjct: 97 RQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQN 150
>AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293
Length = 292
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 21 SRWTPKPEQILILESIF-NSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
+RWTP EQI IL+ ++ N+ + +P D+ +I L +FG + NVFYWFQN
Sbjct: 37 TRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQN 90
>AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245
Length = 244
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 21 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
+RW P PEQ++ILE ++ SG+ P + +I L +G + NVFYWFQN
Sbjct: 7 TRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQN 59
>AT3G11260.1 | chr3:3527606-3528263 FORWARD LENGTH=183
Length = 182
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 22 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
RW P EQ+ IL +F +G+ P D+ +I L +G + NVFYWFQN
Sbjct: 24 RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQN 75
>AT5G05770.1 | chr5:1734487-1734855 FORWARD LENGTH=123
Length = 122
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 22 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
RW P EQ+ +L +F +G+ P D+ +I L +G + NVFYWFQN
Sbjct: 29 RWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQN 80
>AT1G46480.1 | chr1:17236903-17237953 REVERSE LENGTH=252
Length = 251
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 21 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
+RW P EQI ILE ++ GM P + I L ++G + NVFYWFQN
Sbjct: 89 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQN 141
>AT1G20700.1 | chr1:7182558-7183866 FORWARD LENGTH=212
Length = 211
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 19 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
R RWTP Q+ ILESI++ G P + I L G + + NV+ WFQN
Sbjct: 92 TRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQN 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,723,718
Number of extensions: 112302
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 19
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)