BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0681000 Os07g0681000|AK066982
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20920.1 | chr5:7094994-7096661 REVERSE LENGTH=269 348 2e-96
AT3G07920.1 | chr3:2524787-2526229 REVERSE LENGTH=165 200 6e-52
AT5G01940.1 | chr5:363594-364769 REVERSE LENGTH=232 152 1e-37
AT1G36730.1 | chr1:13898706-13900025 REVERSE LENGTH=440 51 6e-07
AT1G77840.1 | chr1:29269087-29270400 FORWARD LENGTH=438 50 1e-06
>AT5G20920.1 | chr5:7094994-7096661 REVERSE LENGTH=269
Length = 268
Score = 348 bits (893), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/271 (66%), Positives = 207/271 (76%), Gaps = 6/271 (2%)
Query: 1 MADEEHAEKREEVSELTPFDPTXXXXXXXVVIQDPSDEVDKLA--EKTENLTVTEPGELN 58
MADE + E REE +L PFDP+ VVIQ+P +++ + + EK+++L V + E +
Sbjct: 1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESS 59
Query: 59 FTGMXXXXXXPVDLDLSINDIGD-GEDILDDQXXXXXXXXXXXXXXAPRYPWEGTDRDYN 117
FTGM P + L N+ D GED+ D+ RYPWEG++RDY
Sbjct: 60 FTGMKKKKKKPTESSLLNNESVDAGEDL--DEIANDEQEGEEGIVLQQRYPWEGSERDYI 117
Query: 118 YDELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHV 177
YDELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP+HV
Sbjct: 118 YDELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHV 177
Query: 178 MMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILRRYINEYVICNGCKSPDTILSKENR 237
M +LLAE+GTSGSLDGQQRLV+KGRFAPKNFE ILRRYI +YVIC GCKSPDTILSKENR
Sbjct: 178 MQYLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYITDYVICLGCKSPDTILSKENR 237
Query: 238 LFFLRCEQCGSSRSVAPIKAGFVAQVGRRKA 268
LFFLRCE+CGS RSVAPIK GFVA+V RRK
Sbjct: 238 LFFLRCEKCGSQRSVAPIKTGFVARVSRRKT 268
>AT3G07920.1 | chr3:2524787-2526229 REVERSE LENGTH=165
Length = 164
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/151 (66%), Positives = 117/151 (77%), Gaps = 8/151 (5%)
Query: 120 ELLGRVFNILRENNPDLAGDRRRTVMRPPQVLRE----GTKKTVFVNFMDLCKTMHRQPE 175
E+L RVFNILREN+P+L G T++ PPQVLRE GTKKTVFVNFMD CKTMHR P+
Sbjct: 18 EILRRVFNILRENSPELVGIWLLTIIWPPQVLREETAKGTKKTVFVNFMDYCKTMHRNPD 77
Query: 176 HVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILRRYINEYVICNGCKSPDTILSKE 235
HVM FLLAE+GT G LD QQRLV++GRF ++FE++LR YI +YV+C CKS + ILSKE
Sbjct: 78 HVMAFLLAELGTRGKLDDQQRLVVRGRFTQRDFESLLRGYILDYVMCIPCKSTEAILSKE 137
Query: 236 NRLFFLRCEQCGSSRSVAPIKAGFVAQVGRR 266
NRLFFLRC +CGS R VAPIK F GRR
Sbjct: 138 NRLFFLRCGKCGSGRPVAPIKINF----GRR 164
>AT5G01940.1 | chr5:363594-364769 REVERSE LENGTH=232
Length = 231
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 99/131 (75%), Gaps = 2/131 (1%)
Query: 115 DYNYDELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP 174
DY Y ELL VF+ LRE + +++ +R RTVM PPQ+L EGT TV +NF DLC+TMHR+P
Sbjct: 72 DYGYKELLSMVFDRLREEDVEVSTERPRTVMMPPQLLAEGTI-TVCLNFADLCRTMHRKP 130
Query: 175 EHVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILRRYINEYVICNGCKSPDTILSK 234
+HVM FLLA+M T SL+ QQRL IKG + K+F+A+ R+YI+ +VIC CKSPDT L++
Sbjct: 131 DHVMKFLLAQMETKVSLNKQQRLEIKGLVSSKDFQAVFRKYIDAFVICVCCKSPDTALAE 190
Query: 235 E-NRLFFLRCE 244
E N LF LRCE
Sbjct: 191 EGNGLFNLRCE 201
>AT1G36730.1 | chr1:13898706-13900025 REVERSE LENGTH=440
Length = 439
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 157 KTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRL-VIKGRFAPKNFEAILRRY 215
KT VN +++ K + R + + E+G D + ++ G +L +
Sbjct: 35 KTNVVNMVEIAKALGRPAAYTTKYFGCELGAQSKFDEKNGTSLVNGAHDTSKLAGLLENF 94
Query: 216 INEYVICNGCKSPDT-ILSKENRLFFLRCEQCG 247
I +YV C GC +P+T IL + ++ L+C CG
Sbjct: 95 IKKYVQCYGCGNPETEILITKTQMLQLKCAACG 127
>AT1G77840.1 | chr1:29269087-29270400 FORWARD LENGTH=438
Length = 437
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 157 KTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRL-VIKGRFAPKNFEAILRRY 215
KT +N +++ K + R P + + E+G D + ++ G +L +
Sbjct: 35 KTNIINNVEIAKALARPPSYTTKYFGCELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENF 94
Query: 216 INEYVICNGCKSPDT-ILSKENRLFFLRCEQCG 247
I ++V C GC +P+T I+ + ++ L+C CG
Sbjct: 95 IKKFVQCYGCGNPETEIIITKTQMVNLKCAACG 127
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,395,630
Number of extensions: 208188
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 5
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)