BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0679300 Os07g0679300|AK099229
(425 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56310.1 | chr3:20882886-20885745 FORWARD LENGTH=438 629 e-180
AT5G08370.1 | chr5:2691116-2693441 REVERSE LENGTH=397 500 e-142
AT5G08380.1 | chr5:2694851-2697616 REVERSE LENGTH=411 471 e-133
AT3G26380.1 | chr3:9660140-9663145 FORWARD LENGTH=648 88 9e-18
>AT3G56310.1 | chr3:20882886-20885745 FORWARD LENGTH=438
Length = 437
Score = 629 bits (1621), Expect = e-180, Method: Compositional matrix adjust.
Identities = 289/388 (74%), Positives = 327/388 (84%)
Query: 37 TAALRRLYDTSNYGKLQLNNGLALTPQMGWNSWNFFACNINETVIRDTADALVSTGLADL 96
+ + +YDTS YG+LQLNNGLA TPQMGWNSWNFFACNINETVI++TADALVS+GLADL
Sbjct: 48 SKSFNSIYDTSMYGRLQLNNGLARTPQMGWNSWNFFACNINETVIKETADALVSSGLADL 107
Query: 97 GYNYVNIDDCWSNVKRGKKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDAGIFTCQV 156
GY +VNIDDCWSN+ R + QL+P P+TFPSGIK LADYVH KGLKLGIYSDAG+FTC+V
Sbjct: 108 GYIHVNIDDCWSNLLRDSEGQLVPHPETFPSGIKLLADYVHSKGLKLGIYSDAGVFTCEV 167
Query: 157 RPGSLHHEKDDAAIFASWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFYSLCEW 216
PGSL HE DDA IFASWGVDYLKYDNC+NLGIKP +RYPPMRDALN+TGR IFYSLCEW
Sbjct: 168 HPGSLFHEVDDADIFASWGVDYLKYDNCFNLGIKPIERYPPMRDALNATGRSIFYSLCEW 227
Query: 217 GQDDPALWAGKVGNSWRTTDDIQDTWKSMTDIADKNNKWASYAGPGGWNDPDMLEVGNGG 276
G DDPALWA +VGNSWRTTDDI DTW SMT IAD NNKWA+YAGPGGWNDPDMLE+GNGG
Sbjct: 228 GVDDPALWAKEVGNSWRTTDDINDTWASMTTIADLNNKWAAYAGPGGWNDPDMLEIGNGG 287
Query: 277 MTFAEYRAHFSIWALMKAPLLIGCDVRNMTKETMEILSNKEVIQVNQDPLGVQGRRILGQ 336
MT+ EYR HFSIWALMKAPLLIGCDVRNMT ET+EILSNKE+I VNQDPLGVQGR+I
Sbjct: 288 MTYEEYRGHFSIWALMKAPLLIGCDVRNMTAETLEILSNKEIIAVNQDPLGVQGRKIQAN 347
Query: 337 GKNGCQEVWAGPLSGNRLAVVLWNRCEESANIIVKLPSVGLDGSSPYSVRDLWKHETLSE 396
G+N CQ+VW+GPLSG+R+ V LWNRC E A I +GL+ + SVRDLW+H+ ++E
Sbjct: 348 GENDCQQVWSGPLSGDRMVVALWNRCSEPATITASWDMIGLESTISVSVRDLWQHKDVTE 407
Query: 397 NVVGTFGAQVDVHDCKMYIFTPAVTVAS 424
N G+F AQVD HDC MY+ TP S
Sbjct: 408 NTSGSFEAQVDAHDCHMYVLTPQTVSHS 435
>AT5G08370.1 | chr5:2691116-2693441 REVERSE LENGTH=397
Length = 396
Score = 500 bits (1287), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/368 (64%), Positives = 280/368 (76%), Gaps = 5/368 (1%)
Query: 51 KLQLNNGLALTPQMGWNSWNFFACNINETVIRDTADALVSTGLADLGYNYVNIDDCWSNV 110
++ +NNGLAL+PQMGWNSWN F CNINET+I+ TADA+VS+GL+ +GY Y+NIDDCW +
Sbjct: 29 RMLMNNGLALSPQMGWNSWNHFQCNINETLIKQTADAMVSSGLSAIGYKYINIDDCWGEL 88
Query: 111 KRGKKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDAGIFTC-QVRPGSLHHEKDDAA 169
KR + L+ TFPSGIK L+DYVH KGLKLGIYSDAG TC Q PGSL HE+ DA
Sbjct: 89 KRDSQGSLVAKASTFPSGIKALSDYVHSKGLKLGIYSDAGTLTCSQTMPGSLGHEEQDAK 148
Query: 170 IFASWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFYSLCEWGQDDPALWAGKVG 229
FASWG+DYLKYDNC N G P++RYP M AL ++GR IF+SLCEWGQ+DPA WAG +G
Sbjct: 149 TFASWGIDYLKYDNCENTGTSPRERYPKMSKALLNSGRSIFFSLCEWGQEDPATWAGDIG 208
Query: 230 NSWRTTDDIQDTWKSMTDIADKNNKWASYAGPGGWNDPDMLEVGNGGMTFAEYRAHFSIW 289
NSWRTT DIQD WKSMT IAD+N++WASYA PG WNDPDMLEVGNGGMT EY +HFSIW
Sbjct: 209 NSWRTTGDIQDNWKSMTLIADQNDRWASYARPGSWNDPDMLEVGNGGMTKEEYMSHFSIW 268
Query: 290 ALMKAPLLIGCDVRNMTKETMEILSNKEVIQVNQDPLGVQGRRILGQGKNGCQEVWAGPL 349
AL KAPLLIGCD+R+M K T E+LSNKEVI VNQD LG+QG+++ K G EVWAGPL
Sbjct: 269 ALAKAPLLIGCDLRSMDKVTFELLSNKEVIAVNQDKLGIQGKKV---KKEGDLEVWAGPL 325
Query: 350 SGNRLAVVLWNRCEESANIIVKLPSVGLDGSSPYSVRDLWKHETLSENVVGTFGAQVDVH 409
S R+AV+LWNR SANI + +GL+ S + RDLW+H T S V A V+ H
Sbjct: 326 SKKRVAVILWNRGSASANITARWAEIGLNSSDIVNARDLWEHSTYS-CVKKQLSALVEPH 384
Query: 410 DCKMYIFT 417
CKMY T
Sbjct: 385 ACKMYTLT 392
>AT5G08380.1 | chr5:2694851-2697616 REVERSE LENGTH=411
Length = 410
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 224/367 (61%), Positives = 269/367 (73%), Gaps = 4/367 (1%)
Query: 54 LNNGLALTPQMGWNSWNFFACNINETVIRDTADALVSTGLADLGYNYVNIDDCWSNVKRG 113
L NGL +TP MGWNSWN F+CNI+E +I++TADALV+TGL+ LGYNYVNIDDCW+ + R
Sbjct: 46 LTNGLGVTPPMGWNSWNHFSCNIDEKMIKETADALVTTGLSKLGYNYVNIDDCWAEISRD 105
Query: 114 KKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDAGIFTC-QVRPGSLHHEKDDAAIFA 172
K L+P TFPSGIK +ADYVH KGLKLGIYSDAG FTC + PGSL +E+ DA FA
Sbjct: 106 SKGSLVPKKSTFPSGIKAVADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGYEEHDAKTFA 165
Query: 173 SWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFYSLCEWGQDDPALWAGKVGNSW 232
WG+DYLKYDNC + G KP RYP M AL +GR IF+SLCEWG PALW VGNSW
Sbjct: 166 EWGIDYLKYDNCNSDGSKPTVRYPVMTRALMKSGRPIFHSLCEWGDMHPALWGSPVGNSW 225
Query: 233 RTTDDIQDTWKSMTDIADKNNKWASYAGPGGWNDPDMLEVGNGGMTFAEYRAHFSIWALM 292
RTT+DI+DTW SM IAD N +A +A PGGWNDPDMLEVGNGGMT EY HFSIWA+
Sbjct: 226 RTTNDIKDTWLSMISIADMNEVYAEHARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAIS 285
Query: 293 KAPLLIGCDVRNMTKETMEILSNKEVIQVNQDPLGVQGRRILGQGKNGCQEVWAGPLSGN 352
KAPLL+GCD+RNMTKETMEI++NKEVI +NQDP GVQ +++ +G EVWAGPLSG
Sbjct: 286 KAPLLLGCDIRNMTKETMEIVANKEVIAINQDPHGVQAKKVRMEGD---LEVWAGPLSGY 342
Query: 353 RLAVVLWNRCEESANIIVKLPSVGLDGSSPYSVRDLWKHETLSENVVGTFGAQVDVHDCK 412
R+A++L NR +I + + +S RDLW+H+TL + VG A VD H CK
Sbjct: 343 RVALLLLNRGPSRTSITALWEDIEIPANSIVEARDLWEHQTLKQKFVGNLTATVDSHACK 402
Query: 413 MYIFTPA 419
+Y+ P
Sbjct: 403 LYVLKPV 409
>AT3G26380.1 | chr3:9660140-9663145 FORWARD LENGTH=648
Length = 647
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 143/351 (40%), Gaps = 89/351 (25%)
Query: 59 ALTPQMGWNSWNFFACNINETVIRDTADALVSTGLADLGYNYVNIDDCW--SNVKRGKKD 116
A P GWNS++ F I+E +A+ +VS L GY YV +D W V+ D
Sbjct: 39 ASFPPRGWNSYDSFCWTISEAEFLQSAE-IVSKRLLPHGYQYVVVDYLWYRKKVEGAYVD 97
Query: 117 -----------QLLPDPKTFPS-----GIKDLADYVHGKGLKLGIYSDAGIFTCQVRPGS 160
+L PDP +PS G ++A+ VH GLK GI+ GI T S
Sbjct: 98 SLGFDVIDEWGRLHPDPGRWPSSRGGKGFTEVAEKVHRMGLKFGIHVMGGISTQAYNANS 157
Query: 161 LHHE---------------------KDDAAI--------------------------FAS 173
L + K+ A + +A
Sbjct: 158 LVMDSVKGGAYEESGRQWRAKDIGIKERACVWMSHGFMSVNTKLGAGKAFLRSLYRQYAE 217
Query: 174 WGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFYSLCEWGQDDPALW--AGKVGNS 231
WGVD++K+D + ++ + + L R + YS+ P + ++ N
Sbjct: 218 WGVDFIKHDCVFGTDFNIEE-ITYVSEVLKELDRPVLYSISPGTSVTPTMAKEVSQLVNM 276
Query: 232 WRTTDDIQDTWKSMTDIAD--KNNKWASYAGPGG-----WNDPDMLEVG-------NGG- 276
+R T D DTWK +T D ++ +S G G W D DML +G N G
Sbjct: 277 YRITGDDWDTWKDVTAHFDISRDLSASSMIGARGLQGKSWPDLDMLPLGWLTDQGSNVGP 336
Query: 277 -----MTFAEYRAHFSIWALMKAPLLIGCDVRNMTKETMEILSNKEVIQVN 322
+ E ++ ++W++ K+PL+ G DVRN+ T +++N ++++N
Sbjct: 337 HRACNLNLEEQKSQMTLWSIAKSPLMFGGDVRNLDATTYNLITNPTLLEIN 387
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,989,410
Number of extensions: 454937
Number of successful extensions: 920
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 912
Number of HSP's successfully gapped: 5
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)