BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0671000 Os07g0671000|Os07g0671000
(105 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31380.1 | chr4:15229837-15230382 FORWARD LENGTH=182 104 1e-23
AT5G24860.1 | chr5:8541822-8542154 FORWARD LENGTH=111 99 4e-22
AT5G10625.1 | chr5:3358934-3359272 FORWARD LENGTH=113 95 8e-21
>AT4G31380.1 | chr4:15229837-15230382 FORWARD LENGTH=182
Length = 181
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 71/124 (57%), Gaps = 25/124 (20%)
Query: 4 GGVWVFRNNGVMEL---------------------EEQATSRKALVHVATSEVIRSTEAL 42
GVWVF NGVM L ++Q RK LVH+ +SEV+ S +L
Sbjct: 59 SGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGSL 118
Query: 43 ERRLGALGWERYYEDRAT---LQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNRDHFK 99
E+ L LGWERYY T LQ H+R S DLIS+PRDFS+F S HMYD+VVKN + F
Sbjct: 119 EKILKNLGWERYYSGDNTDHLLQFHKRT-SIDLISLPRDFSKFNSIHMYDIVVKNPNVFH 177
Query: 100 VVDL 103
V D+
Sbjct: 178 VRDM 181
>AT5G24860.1 | chr5:8541822-8542154 FORWARD LENGTH=111
Length = 110
Score = 99.0 bits (245), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 70/110 (63%), Gaps = 12/110 (10%)
Query: 5 GVWVFRNNGVMELEEQATS--------RKALVHVATSEVIRSTEALERRLGALGWERYYE 56
GVWVF+N GV+ L E RK +V++ T EV+ S LE+ L +LGWERY+
Sbjct: 3 GVWVFKN-GVIRLVENPNQSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWERYFG 61
Query: 57 --DRATLQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNRDHFKVVDLH 104
D LQ H+R S DLIS+PRDF++F S +MYD+VVKN ++F V D H
Sbjct: 62 GGDTDLLQFHKR-SSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRDSH 110
>AT5G10625.1 | chr5:3358934-3359272 FORWARD LENGTH=113
Length = 112
Score = 94.7 bits (234), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 14/112 (12%)
Query: 5 GVWVFRNNGVMELEEQATS-----------RKALVHVATSEVIRSTEALERRLGALGWER 53
GVWVF NNGV+ L E R LV++ T E + S +LE+ L +LGWER
Sbjct: 3 GVWVF-NNGVIRLVENPNQSGGVSTQSHGRRNVLVYLPTGEAVSSYSSLEQILRSLGWER 61
Query: 54 YYE-DRATLQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNRDHFKVVDLH 104
Y+ D +Q H+R S DLIS+PRDFS+F S +MYD+VVKN + F V D +
Sbjct: 62 YFSGDSDLIQYHKRS-SIDLISLPRDFSKFNSVYMYDIVVKNPNSFHVRDFN 112
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,186,321
Number of extensions: 70507
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 3
Length of query: 105
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 30
Effective length of database: 9,050,369
Effective search space: 271511070
Effective search space used: 271511070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)