BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0669600 Os07g0669600|AK066595
(173 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18540.1 | chr5:6153924-6155877 FORWARD LENGTH=169 110 4e-25
>AT5G18540.1 | chr5:6153924-6155877 FORWARD LENGTH=169
Length = 168
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 70/80 (87%), Gaps = 1/80 (1%)
Query: 6 DLTDEERRALRGSKFAPLPAPTAPSRPQP-RMAHPGGPLTTNKAAALAKFLERKLQQPDG 64
+LT++E+RALRGSKFAPL + + SR +P R+AHPGGPL TNKAAALAKFLERKLQ P+G
Sbjct: 9 ELTEDEKRALRGSKFAPLTSLPSSSRSKPPRLAHPGGPLKTNKAAALAKFLERKLQDPNG 68
Query: 65 LESLNPDLVKLAVRNAKETI 84
L S++P LV+LAV+NAK+T+
Sbjct: 69 LASIDPALVELAVKNAKDTV 88
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,379,468
Number of extensions: 85479
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 108 (46.2 bits)