BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0667400 Os07g0667400|AK073297
         (338 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05100.1  | chr3:1424155-1425667 FORWARD LENGTH=337            401   e-112

>AT3G05100.1 | chr3:1424155-1425667 FORWARD LENGTH=337
          Length = 336

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/261 (71%), Positives = 218/261 (83%), Gaps = 5/261 (1%)

Query: 78  DVAWLKSQLASNSLPLLASHDAWHRLRKGINPRTREQQLFDINRHHGISHYPDEEATNHT 137
           D+ W++  + SN L     H   + LRKGINPRTR+QQL D+ ++ GISHY  +EA NHT
Sbjct: 81  DIEWVRDLIRSNGL-----HMQKNELRKGINPRTRDQQLADLIQYKGISHYEGDEANNHT 135

Query: 138 ALPCPGELLVEEHHSNYGEPWAGGRDVFEFLANASALTPRDQVLEIGCGTLRVGLHFIRF 197
           ALPCPGELLVE+HHSNYGEPWAGGRDVFEFLA +S+L P  +VLEIGCGTLRVGLHFIR+
Sbjct: 136 ALPCPGELLVEQHHSNYGEPWAGGRDVFEFLAESSSLKPNSRVLEIGCGTLRVGLHFIRY 195

Query: 198 LEAAKFHCLERDELSLMAALRYELPAQGLLYKRPMIVRGEDMDFSRFGDTVMYDLIYASA 257
           L    FHCLE+DELSLMAALRYELP+QGLL+KRP+IVRG+DM+FS+FG    YDLIYASA
Sbjct: 196 LSPQHFHCLEKDELSLMAALRYELPSQGLLHKRPLIVRGDDMEFSKFGSDTAYDLIYASA 255

Query: 258 VFLHIPDKLVWTGLERLAGKLRPQRGRIFVSHNIKFCSRLGGDECTRRLTELGLEYVGKH 317
           VFLH+PDKLVWTGLERL  +L+P  GRIFVSHN+KFCSRLG D+C+++L  LGLEY+GK 
Sbjct: 256 VFLHMPDKLVWTGLERLVDRLKPYDGRIFVSHNVKFCSRLGQDKCSQKLASLGLEYLGKQ 315

Query: 318 THDSLLFNHYEIWFEFRRPKV 338
           THDSLLFNHYEIWF FRR K 
Sbjct: 316 THDSLLFNHYEIWFGFRRFKT 336



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,567,573
Number of extensions: 257219
Number of successful extensions: 616
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 239
Effective length of database: 8,392,385
Effective search space: 2005780015
Effective search space used: 2005780015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)