BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0657500 Os07g0657500|AK102906
         (198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09920.1  | chr1:3224863-3226860 REVERSE LENGTH=193            171   3e-43
AT4G15420.1  | chr4:8823822-8825949 FORWARD LENGTH=562             69   2e-12

>AT1G09920.1 | chr1:3224863-3226860 REVERSE LENGTH=193
          Length = 192

 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 9/182 (4%)

Query: 13  REIPSPNIALHSAHCARNLQKCEHCGYMVPKKLMDEHYDENHAPMICSLCQKTVQRELWD 72
           R+IPS NI LH  HCARNL+KC+ CG MVPKK  +EHY   HAP+ CS+C++T++RE++D
Sbjct: 17  RDIPSLNIDLHRVHCARNLEKCKICGDMVPKKHAEEHYLNTHAPIACSMCKETIEREIFD 76

Query: 73  LHKGLQCPQRMLACQYCDFELPAADIYEHQDVCGNRTEYCQPCRKYVRLREQIGHDIQFH 132
            HKG  CP+R++ C++C+F LPA D+ EHQ+VCGNRTE C  C  YVRLRE+  H+ +  
Sbjct: 77  SHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCNSYVRLRERYNHETKC- 135

Query: 133 SQPIVASESSSDRSTLXXXXXXXXXXQPVRPKHTHGLQRKQFLVTIVIAGISILVGSVLL 192
                     +  S+              R +  +G+  K+   TI I GI++++GS+  
Sbjct: 136 --------PGTVESSRRIPRAAEGDGNGRRRRDGNGVSNKRLFFTIAITGIAVIIGSLFF 187

Query: 193 KK 194
           ++
Sbjct: 188 QR 189



>AT4G15420.1 | chr4:8823822-8825949 FORWARD LENGTH=562
          Length = 561

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 32/151 (21%)

Query: 15  IPSPNIALHSAHCAR--------------------NLQKCEHCGYMVPKKLMDEHYDENH 54
           IPS +IALH  +C+R                    N   CE CG  +    M++H    H
Sbjct: 410 IPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGKALQPTEMEKHLKVFH 469

Query: 55  APMICSLCQKTVQRELWDLHKGLQCPQRMLACQYCDFELPAAD-----------IYEHQD 103
            P+ C  C   +++E    H+G  CP R++AC++C   + A +           + EH+ 
Sbjct: 470 EPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSAADTRDRMRGMSEHES 528

Query: 104 VCGNRTEYCQPCRKYVRLREQIGHDIQFHSQ 134
            CG+RT  C  C + V L++   H I  H +
Sbjct: 529 TCGSRTAPCDSCGRSVMLKDMDIHQIAVHGK 559



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,287,342
Number of extensions: 167312
Number of successful extensions: 441
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)