BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0656600 Os07g0656600|AK060061
         (266 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13720.1  | chr5:4427960-4429029 FORWARD LENGTH=263            300   7e-82
AT4G19390.1  | chr4:10574903-10576355 REVERSE LENGTH=274          172   2e-43

>AT5G13720.1 | chr5:4427960-4429029 FORWARD LENGTH=263
          Length = 262

 Score =  300 bits (767), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 165/184 (89%), Gaps = 5/184 (2%)

Query: 86  AVESTVEKLIFDFRFLALLAV----AGSLLCFLSGCVYIKEAYHVYWTSCVRGVHTGQMV 141
           + ES VE++IFDFRFLALLAV    AGSLLCFL+GCVYI EAY VYWT+C +G+HTGQMV
Sbjct: 78  STESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCSKGIHTGQMV 137

Query: 142 LRLVEAIDVYLAGTVMLIFGMGLYGLFISNDFPDVPA-SDRALKGSSLFGMFALKERPRW 200
           LRLVEAIDVYLAGTVMLIF MGLYGLFIS+   DVP  SDRAL+ SSLFGMFA+KERP+W
Sbjct: 138 LRLVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFGMFAMKERPKW 197

Query: 201 MRISSLDELKTKLGHIIVMILLVKMFERSKMVHITTGMDLLSYAVCIFLSSASLYILHNL 260
           M+ISSLDELKTK+GH+IVMILLVKMFERSKMV I TG+DLLSY+VCIFLSSASLYILHNL
Sbjct: 198 MKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNL 257

Query: 261 HRPE 264
           H+ E
Sbjct: 258 HKGE 261



>AT4G19390.1 | chr4:10574903-10576355 REVERSE LENGTH=274
          Length = 273

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 124/181 (68%), Gaps = 11/181 (6%)

Query: 86  AVESTVEKLIFDFRFLALLAVAGSLL----CFLSGCVYIKEAYHVYWTSCVRGVHTGQMV 141
           A+E  +EK+I+  RF+  L   GSLL    CF+ GC+Y+ +++  Y       V+ G+++
Sbjct: 96  ALEEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQY------SVNRGKVI 149

Query: 142 LRLVEAIDVYLAGTVMLIFGMGLYGLFISN-DFPDVPASDRALKGSSLFGMFALKERPRW 200
             LVEAID+YL GTVML+FG+GLY LFISN D  +    D     SSLFGMF LKERP+W
Sbjct: 150 FLLVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLKERPQW 209

Query: 201 MRISSLDELKTKLGHIIVMILLVKMFERSKMVHITTGMDLLSYAVCIFLSSASLYILHNL 260
           + + S+ ELKTKLGH+IVM+LL+ +F++SK V IT+  DLL  +V IF SSA L++L  L
Sbjct: 210 LEVKSVSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLCISVSIFFSSACLFLLSRL 269

Query: 261 H 261
           +
Sbjct: 270 N 270



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,959,533
Number of extensions: 178533
Number of successful extensions: 570
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)