BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0650600 Os07g0650600|AB072978
(955 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14280.1 | chr4:8222518-8225074 FORWARD LENGTH=799 120 4e-27
AT5G18980.1 | chr5:6334944-6337943 REVERSE LENGTH=836 110 3e-24
AT3G06210.1 | chr3:1880093-1883317 FORWARD LENGTH=841 108 2e-23
>AT4G14280.1 | chr4:8222518-8225074 FORWARD LENGTH=799
Length = 798
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 158/663 (23%), Positives = 270/663 (40%), Gaps = 111/663 (16%)
Query: 304 QEDYDGHG---DTTNLPQSLTIFYGMVLGQGLLYIIAAVLEVFSFIPRIHLVRR----GG 356
++DY G+ +TNL +LT+FY + L + LL+++ + I IH++ + G
Sbjct: 215 KQDYGGNDLKPKSTNLHAALTLFYSLALAEALLFLVEKAYWEY-MISVIHILEKVNEECG 273
Query: 357 FTGRWGAESVXXXXXXXXXXXXEGGLFAPKRISLSNFAMDSLNSDLSKNQLYGVQMMHIF 416
R+G SV G +F ++ + FAM+ L ++ QL G +++ IF
Sbjct: 274 LE-RFGTGSVRRFFYDAYSRCLNGSIFDGLKMDMVIFAMELLVANSLDEQLIGAEILSIF 332
Query: 417 LQNGLTKARLLEKLTTSTQTMARLISMLDWSSRHHRATIRLYAAKVTAELAKNLRVETVP 476
+ L+K+ T+ + RL+ ML+W ++ +R+ AA++ + L
Sbjct: 333 STHDDYSVDTLQKIGTNLAIIERLVEMLNWRDKNQE-DVRMSAAEILSRL---------- 381
Query: 477 GTLQLVSTLLDADGKPKRGHPLLDADDDQDHFVDIADRQDKRHDIAGNQGQRREPIGDTN 536
A ++ +AG G I +
Sbjct: 382 -----------------------------------ASKKQNSLRVAGIPG----AIESIS 402
Query: 537 NLLETPTRSTHINDQRYIPRIWQRILEYWSIPKEQPLTDDDL--LPALGMSIIYSLAGCD 594
+LLE+ S D+ EQ + +L L LG+ I+ LA D
Sbjct: 403 SLLESTRDSGEATDE----------------IGEQSINHSNLWTLNNLGLLILKRLAR-D 445
Query: 595 QNNCVEIDRVTDLIPNIIGFTSFRSAMVN------SEAXXXXXXXXXXXXXXRLTSIEGE 648
NC +I + L+ II FT ++ +E +L S G
Sbjct: 446 HENCGKIGKTKGLLSKIIDFTYAEKNLLENPNVAVAEPYKILAVKRSLKLLKKLVSTTGT 505
Query: 649 IGITLRYKISKHPFLLRNLAEILRDNSSNKQELRKLVVGILRNLAIDRHTRQEMGQMQML 708
G LR IS F + N+ E L S + L+KL IL LA + +++G +
Sbjct: 506 TGKNLRMTISGIVFTVSNIRETLHHGKS-QPHLQKLGAEILTFLAFEEGATEKIGGTGGV 564
Query: 709 ITTLIKAFLDFKGLFSSDVDCLLPK-------VAGQALVMLSSENSHNCFVMLKEPDFIH 761
+ L+ FL+ + +PK AG+++ ML+ + NC +L+ +
Sbjct: 565 LKGLLCIFLNNE----------IPKDKSGVRVSAGESVAMLAQGSKSNCQKILRA----N 610
Query: 762 KLKNMILIHGDKYIYV-AASLLRNMCLY-AQHELTESDQKELSHTLREVLERIMDTEGAE 819
LK ++ + I + AA +LRN+C Y A + E ++ + VL+ I E
Sbjct: 611 VLKGLVEALDNPLIRLNAARILRNLCAYTAPGQFNEQMKEVIKSAGATVLKAIKSEERKP 670
Query: 820 LEILIGLSSQICKLI--PEEFSQELEH-GQIKRRFIKRLVDTLNANMNPSSHCPGIRRVV 876
E+++GL+ I KL+ PEE E G + K L++ L P P IRR
Sbjct: 671 QEVMVGLAPHILKLMNTPEELRGMFEEAGVTEEELAKALINILKRYEQPVPKVPRIRRFA 730
Query: 877 LEQSIHMMEYNSRYANYFNEYQMMDALSFVELTPSRAENYMVFLGDAGFMECNTPLSALV 936
+E +I MM+ N F +M + L V T + EN+ +F G G + ++ L+
Sbjct: 731 IELTIAMMKANVETVKTFQNLEMKNELETVFETAAELENFDIFSGTVGLARHGSTINELI 790
Query: 937 DRA 939
+ A
Sbjct: 791 EEA 793
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 35 APEKWLNYFLRLLAVIESVGNAFGTLAFTWATVVLLGGYPTVLK-RDFGIATAIIFLEAT 93
APEK L F LAV+E + + G+L F WATVVLLGG+ L+ DF T I+ +E
Sbjct: 41 APEKKLTLFALRLAVLEKIASGLGSLGFVWATVVLLGGFAGSLEITDFWFVTVILVIEGA 100
Query: 94 RMFTRNNRLDYQ 105
R+F+R++ L+ Q
Sbjct: 101 RLFSRSHELELQ 112
>AT5G18980.1 | chr5:6334944-6337943 REVERSE LENGTH=836
Length = 835
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 171/372 (45%), Gaps = 17/372 (4%)
Query: 582 LGMSIIYSLAGCDQNNCVEIDRVTDLIPNIIGFTSFRSAMVNSEAXXXXXX-----XXXX 636
LG+ I+ LA D +NC ++ L+P II FT ++ E
Sbjct: 469 LGLLILKKLAK-DHDNCGKLGNTRGLLPKIIDFTHADENLLRDENADIARSRVLTLKRSL 527
Query: 637 XXXXRLTSIEGEIGITLRYKISKHPFLLRNLAEILRDNSSNKQELRKLVVGILRNLAIDR 696
L S G G LR +IS+ F + N+ ++L+ + + +L+KL +GIL NLA++
Sbjct: 528 QLVKMLASTTGNTGKCLRREISEIVFTVSNVRDVLK-HGARYPKLQKLGIGILTNLALEA 586
Query: 697 HTRQEMGQMQMLITTLIKAFLDFKGLFSSDVDCLLPKVAGQALVMLSSENSHNCFVMLKE 756
R+ +G ++ L F + + + AG+A+ ML E+ NC +L+
Sbjct: 587 EARERIGGTGGVLKELFNIFFKRETRGDEGNEGCVRIAAGEAIAMLVLESKSNCLHVLR- 645
Query: 757 PDFIHKLKNMILIHGDKYIYV-AASLLRNMCLYAQHELTESDQKELSHTLREVLERIMDT 815
+ + ++ I V AA +LRNMCLY+ E D K + VL+ I
Sbjct: 646 ---LGVMGRLVEALEVPSIRVNAARVLRNMCLYSGDECFH-DLKFVKAAAPTVLKSITSE 701
Query: 816 EGAELEILIGLSSQICKLIP-EEFSQELEHGQIKRR-FIKRLVDTLNANMNPSSHCPGIR 873
+ E+++GL++Q+ + + +E S + IKR+ LV L N P+ P IR
Sbjct: 702 DNKLQEVMVGLAAQVFRFMSSKESSYVFMYSGIKRQELANSLVSILKKNDKPAIKVPRIR 761
Query: 874 RVVLEQSIHMMEYNSRYANY--FNEYQMMDALSFVELTPSRAENYMVFLGDAGFMECNTP 931
R V+E +I MME + N F E + L V T + EN+ VF G G +
Sbjct: 762 RFVIELAIWMMEDDELEDNVALFREMGLEKELEKVLETTAELENFDVFSGTVGLSRHSRT 821
Query: 932 LSALVDRAKELM 943
+ +L + A E++
Sbjct: 822 VHSLAELALEIL 833
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 18 AAPASQSGPADHKAVAAAPEKWLNYFLRLLAVIESVGNAFGTLAFTWATVVLLGGYPTVL 77
AA S + K+ APEK L F LA++E GTL F WATVVLLGG+ L
Sbjct: 52 AASISSATAFRRKSTVPAPEKKLTLFALQLAILEKTATGIGTLGFIWATVVLLGGFAITL 111
Query: 78 K-RDFGIATAIIFLEATRMFTRNNRLDYQ 105
DF T I+ +E R+F+R++ L++Q
Sbjct: 112 DGSDFWFITIILLIEGARIFSRSHELEWQ 140
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 307 YDGHGDTTNLPQSLTIFYGMVLGQGLLYIIAAVLEVF--SFIPRIHLVRRGGFTGRWGAE 364
+ G D N +L IFY + + LL+++ V + S + V R G G
Sbjct: 251 HKGDTDKRNRQSALNIFYSLAFAEALLFLVEKVYWEWQVSVCNLLENVTRECEFGVSGLV 310
Query: 365 SVXXXXXXXXXXXXEGGLFAPKRISLSNFAMDSLNSDLSKNQLYGVQMMHIFLQNGLTKA 424
S+ G +F ++ + +F M+ LNS+ S QL GV+++ F
Sbjct: 311 SIKRFFYDSYSKCVNGSIFDGLKMDIVSFGMELLNSNSSDEQLIGVRILRQFSVTERYSE 370
Query: 425 RLLEKLTTSTQTMARLISMLDWSSRHHRATIRLYAAKVTAELA----KNLRVETVPGTLQ 480
LEK+ + + RL+ ML+W IR AA++ ++LA +LRV + G ++
Sbjct: 371 DTLEKIGINFPVIERLVEMLNWKDLQEE-EIRRSAAEILSKLAGKKQNSLRVAGISGAME 429
Query: 481 LVSTLLD 487
+S+LL+
Sbjct: 430 SISSLLE 436
>AT3G06210.1 | chr3:1880093-1883317 FORWARD LENGTH=841
Length = 840
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 164/351 (46%), Gaps = 16/351 (4%)
Query: 582 LGMSIIYSLAGCDQNNCVEIDRVTDLIPNIIGFTSFRSAMVNSEAXXXX-----XXXXXX 636
LG+ I+ L+ D +NC +I L+P II FT + ++ E
Sbjct: 474 LGLLILKKLSR-DHDNCGKIGNTRGLLPKIIDFTHTDATLLKDENADMVLSRVLTVKRSL 532
Query: 637 XXXXRLTSIEGEIGITLRYKISKHPFLLRNLAEILRDNSSNKQELRKLVVGILRNLAIDR 696
L S G G LR +IS+ F + NL ++LR + +L+KL + IL LA++
Sbjct: 533 QLVKMLVSTSGNTGKCLRREISEIVFTISNLRDVLR-HGVRYPKLQKLGIEILSFLALET 591
Query: 697 HTRQEMGQMQMLITTLIKAFLDFKGLFSSDVDCLLPKVAGQALVMLSSENSHNCFVMLKE 756
R+ + ++ L FL K + + + + AG+A+ ML+ E+ NC +LK
Sbjct: 592 DGRERIAVTGGVLKELFSIFLKSK-IHGDENEKRVRMAAGEAIGMLALESRSNCIQILKL 650
Query: 757 PDFIHKLKNMILIHGDKYIYV-AASLLRNMCLYAQHELTESDQKELSHTLREVLERIMDT 815
F ++ + + I V AA +LRN+C+Y+ HE D + + VL+ I
Sbjct: 651 GVFGRLVEALEV----PLIRVNAARVLRNLCIYSGHECF-LDLRFIKTAAPTVLKSITSG 705
Query: 816 EGAELEILIGLSSQICKLIPEEFSQEL--EHGQIKRRFIKRLVDTLNANMNPSSHCPGIR 873
+ LE+++GL++Q+ K + E + + + G K+ LV L + P+ P IR
Sbjct: 706 DNKLLEVMLGLAAQVFKFMSSEEANIVLTDSGIKKQELANSLVSILKKHDKPAIKVPRIR 765
Query: 874 RVVLEQSIHMMEYNSRYANYFNEYQMMDALSFVELTPSRAENYMVFLGDAG 924
R V+E +I MME + F + M L V T + EN+ VF G G
Sbjct: 766 RFVIELAIWMMEDDVENVGMFRDLGMEKELVKVLETTAELENFDVFSGTVG 816
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 19 APASQSGPADHKAVAAAPEKWLNYFLRLLAVIESVGNAFGTLAFTWATVVLLGGYPTVL- 77
A + S A H++ + APE+ L F LA+IE + GTL F WATVVLLGG+ L
Sbjct: 51 AASVSSAIAFHRSTSPAPEQKLTLFALRLAIIEKIATNLGTLGFIWATVVLLGGFAITLE 110
Query: 78 KRDFGIATAIIFLEATRMFTRNNRLDYQ 105
K DF T I+ +E TR+F+R++ L++Q
Sbjct: 111 KSDFWFITIILLIEGTRIFSRSHELEWQ 138
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 48/287 (16%)
Query: 225 PIIINRVHGA---LGRKYVF-------WR-------PFILYSCMLAAIVLPMFMIDKLYR 267
PI+ N + A +GR+ +F W+ P+ + + + + ++ + L
Sbjct: 177 PILDNGLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRILYWLQLLSA 236
Query: 268 YAIIVLDISALVIVSFGNLQIPXXXXXXXXXXXGFDQEDYDGHGDTTNLPQSLTIFYGMV 327
A + L LV+ ++G++Q DG D N +L+IFY +
Sbjct: 237 SACVALSSYKLVMHNYGDVQ--------------------DGDLDKRNRQAALSIFYSLA 276
Query: 328 LGQGLLYIIAAVLEVFSFIPRIHLV----RRGGFTGRWGAESVXXXXXXXXXXXXEGGLF 383
L + LL++ + + HL+ R GF G G S+ G +F
Sbjct: 277 LAEALLFLAEKAYWEWE-VSVCHLLENVTRECGF-GVTGMVSIKRFFYDAYSKSVNGSIF 334
Query: 384 APKRISLSNFAMDSLNSDLSKNQLYGVQMMHIFLQNGLTKARLLEKLTTSTQTMARLISM 443
++ + +FAMD L S+ S QL G +++ F N LEK+ + + RL+ M
Sbjct: 335 DGVKMDMVSFAMDLLGSNCSDEQLIGARILRQFAVNERFAEDTLEKIGINLPVIERLVEM 394
Query: 444 LDWSSRHHRATIRLYAAKVTAELA----KNLRVETVPGTLQLVSTLL 486
L+W IR AA++ ++LA +LRV + G ++ +S+LL
Sbjct: 395 LNWKDLQEEE-IRRSAAEILSKLAGKKQNSLRVAGISGAMESISSLL 440
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,040,263
Number of extensions: 705569
Number of successful extensions: 2073
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2056
Number of HSP's successfully gapped: 9
Length of query: 955
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 847
Effective length of database: 8,145,641
Effective search space: 6899357927
Effective search space used: 6899357927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 117 (49.7 bits)