BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0642800 Os07g0642800|AK073689
(494 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26770.1 | chr2:11404257-11407743 REVERSE LENGTH=497 486 e-138
AT3G56480.1 | chr3:20936480-20938986 REVERSE LENGTH=491 362 e-100
AT2G40820.1 | chr2:17036768-17039474 REVERSE LENGTH=493 359 2e-99
>AT2G26770.1 | chr2:11404257-11407743 REVERSE LENGTH=497
Length = 496
Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/465 (51%), Positives = 334/465 (71%)
Query: 28 FIRNKFPTYKKSLNGIVIKLTDDQEMPSLKEAVAKETADLLHRSQRLSVRELAMKFEKGL 87
F ++FP Y+ N + + DD ++ S+KE VA+ETA L+ + +RLSVR+LA KFEKGL
Sbjct: 26 FASSRFPNYRIGANDQIFDVKDDPKVMSMKEVVARETAQLMDQQKRLSVRDLAHKFEKGL 85
Query: 88 NTATLLSNEVKWRQAALLERDILLKNLKSVLESLRSRVAGKHKDEIEESLSMVDVLTVQL 147
A LS E K ++A LE+ +LLK L+ LESLR RVAG++KD++EE+++MV+ L VQL
Sbjct: 86 AAAAKLSEEAKLKEATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQL 145
Query: 148 SKREDELLQQKAEVAKIATSLKLASEDARRIVEEERSNARIEIDNARAAVQKVEQLVKEQ 207
++RE EL +KAEV K+A+ LK ASEDA+++V+EER+ AR EI++ARAAVQ+VE+ ++E
Sbjct: 146 TQREGELFIEKAEVKKLASFLKQASEDAKKLVDEERAFARAEIESARAAVQRVEEALREH 205
Query: 208 EIDPQINGKQDEDELKEKAQEARRVKMLHCPSKAMDIENEIEVLREQLAEKSSNCVHLLK 267
E + +GKQD ++L ++ QEARR+KMLH PS+ MD+E E+ LR QLAEKS + + L K
Sbjct: 206 EQMSRASGKQDMEDLMKEVQEARRIKMLHQPSRVMDMEYELRALRNQLAEKSKHFLQLQK 265
Query: 268 ELHLHQSYEENDVXXXXXXXXXXXXXXXRIVSQSDGYVDLSRSTIQWFRVQPEGNKKEII 327
+L + + EEN R+ S+ DLS+ TIQW+R +G+KKE+I
Sbjct: 266 KLAMCRKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELI 325
Query: 328 SGAIKQAYAPEPHDVGRYLQAEINHCGEISVVKTAGPVDPAAGLVDYVETLLRNPETEYN 387
SGA K YAPEP DVGR L A+I + G + T G +DPAAGL YVE L+R + ++N
Sbjct: 326 SGATKSVYAPEPFDVGRVLHADIIYDGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFN 385
Query: 388 VVVLQVNGIKQPTDSIHVLSIGKLRMRLAKGKTVIAKEFYSSTMQLCGMRGGGDAAPQAM 447
VVV Q++G ++SIH+ +GK+R++L KGKTVIAKE+YSS MQLCG+RGGG+AA QA+
Sbjct: 386 VVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLCGVRGGGNAAAQAL 445
Query: 448 YWQPRRDLSLVLGFETARERNSAIMLARRFAIDCNIILAGPGDKT 492
YWQ ++ +S V+ FE+ RERN+AIMLARRFA DCN+ LAGP D+T
Sbjct: 446 YWQAKKGVSFVIAFESERERNAAIMLARRFACDCNVTLAGPEDRT 490
>AT3G56480.1 | chr3:20936480-20938986 REVERSE LENGTH=491
Length = 490
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/467 (42%), Positives = 299/467 (64%), Gaps = 5/467 (1%)
Query: 28 FIRNKFPTYKKSL-NGIVIKLTDDQEMPSLKEAVAKETADLLHRSQRLSVRELAMKFEKG 86
F + FPTYK N IV + +D++ PS+KE V KE+ L + +RLSVR+LA KF+K
Sbjct: 25 FASDHFPTYKLGPDNQIVEEPKEDEKGPSVKETVEKESELLSDQHKRLSVRDLASKFDKN 84
Query: 87 LNTATLLSNEVKWRQAALLERDILLKNLKSVLESLRSRVAGKHKDEIEESLSMVDVLTVQ 146
L A L+NE K R+ A LE ++LK L+ LE +R R G++K ++E ++SMV+ L V+
Sbjct: 85 LAAAVSLANEAKLREVASLEGHVMLKKLRDALEYMRGRTDGQNKQDVETAISMVEALAVK 144
Query: 147 LSKREDELLQQKAEVAKIATSLKLASEDARRIVEEERSNARIEIDNARAAVQKVEQLVKE 206
L++ E EL+Q+K EV K+ LK SEDA+++V +E+S + EI+ ARA V ++ + +E
Sbjct: 145 LTQNEGELIQEKFEVKKLGNFLKQTSEDAKKLVNQEKSFSCAEIETARAVVLRLGEAFEE 204
Query: 207 QEIDPQINGKQ--DEDELKEKAQEARRVKMLHCPSKAMDIENEIEVLREQLAEKSSNCVH 264
QE + + Q D ++L E+ QEAR++K +H P+K M +++E+ LR ++ EK N V
Sbjct: 205 QERISEASRAQGPDVEKLVEEVQEARQIKRMHHPTKVMGMQHELHGLRNRIQEKYMNSVK 264
Query: 265 LLKELHLHQSYEENDVXXXXXXXXXXXXXXXRI-VSQSDGYVDLSRSTIQWFRVQPEGNK 323
L KE+ + + EE+ RI V+ D DLS +IQW+R E ++
Sbjct: 265 LHKEIAIIKRVEESKSCPFVLEGKQSLGSCLRIRVNAQDNAPDLSNCSIQWYRAACETSR 324
Query: 324 KEIISGAIKQAYAPEPHDVGRYLQAEINHCGEISVVKTAGPVDPAAGLVDYVETLLRNPE 383
+E ISGAI+ YAPEP DVGR LQA+I G+ V T PVDP +GL VE+L+R
Sbjct: 325 REAISGAIQSMYAPEPFDVGRILQADILSNGQKFTVTTDDPVDPDSGLPSRVESLMRKSN 384
Query: 384 TEYNVVVLQVNGIKQPTDSIHVLSIGKLRMRLAKGKTVIAKEFYSSTMQLCGMRGGGDAA 443
+E++VV+ Q+NG + S HV ++GK R++L++G A+E YS++MQLCG+RG A
Sbjct: 385 SEFSVVISQMNGQDYASRS-HVFTVGKTRIKLSRGWITKARELYSTSMQLCGVRGNIKAP 443
Query: 444 PQAMYWQPRRDLSLVLGFETARERNSAIMLARRFAIDCNIILAGPGD 490
+A++WQPR+ L+ +L FE+ ERN+AI LAR++A DC++ L GP D
Sbjct: 444 TKAVFWQPRKSLTFILTFESEHERNAAIALARKYAFDCSVTLLGPDD 490
>AT2G40820.1 | chr2:17036768-17039474 REVERSE LENGTH=493
Length = 492
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/467 (40%), Positives = 301/467 (64%), Gaps = 4/467 (0%)
Query: 27 NFIRNKFPTYKKSLNGIVIKLTD-DQEMPSLKEAVAKETADLLHRSQRLSVRELAMKFEK 85
+F N FPTYK + ++ D D ++PS+K+ V KET DL + ++LSVR+LA KF+K
Sbjct: 27 SFASNHFPTYKLGPDDQIVDEPDEDDKVPSVKDVVGKETGDLSDQHKKLSVRDLACKFDK 86
Query: 86 GLNTATLLSNEVKWRQAALLERDILLKNLKSVLESLRSRVAGKHKDEIEESLSMVDVLTV 145
L A+ L +E K LE ++LK L+ LE++R R+ G++++ +E+++SMV+ L V
Sbjct: 87 NLAAASKLVDEAKLNDVTSLEGHVMLKKLRDALETMRGRMDGRNREAVEKAISMVEALAV 146
Query: 146 QLSKREDELLQQKAEVAKIATSLKLASEDARRIVEEERSNARIEIDNARAAVQKVEQLVK 205
+L++ E EL+ K EV K+A+ LK AS+DA+++V +E+S A EI++ARA V K+ +
Sbjct: 147 KLTQNEGELIHDKFEVKKLASFLKKASDDAKKLVNQEKSFACAEIESARALVMKLGGAFE 206
Query: 206 EQEIDPQINGKQ--DEDELKEKAQEARRVKMLHCPSKAMDIENEIEVLREQLAEKSSNCV 263
EQE+ + + Q + ++L E+ QEARR++ LH P+ + +++E+ L+ Q+ EKS+ V
Sbjct: 207 EQELCSKASRDQGPNVEKLVEEVQEARRIRRLHKPTMVIGMQHELRDLKSQIQEKSAYSV 266
Query: 264 HLLKELHLHQSYEENDVXXXXXXXXXXXXXXXRIVSQSDGYVDLSRSTIQWFRVQPEGNK 323
L +E+ + + E + RI + SD +D+S+ +I W+R E ++
Sbjct: 267 KLQREIAIIKKAEGSKSCPYVLDGAQSLGSCLRIRASSDSGIDISKCSIHWYRAASESSR 326
Query: 324 KEIISGAIKQAYAPEPHDVGRYLQAEINHCGEISVVKTAGPVDPAAGLVDYVETLLRNPE 383
+E ISGA + YAPEP DVGR +QA+I G+ V T GP++ AAGL VE+LLR
Sbjct: 327 REAISGANRSVYAPEPFDVGRVIQADIVSNGQKFTVTTDGPINTAAGLQSRVESLLRKSN 386
Query: 384 TEYNVVVLQVNGIKQPTDSIHVLSIGKLRMRLAKGKTVIAKEFYSSTMQLCGMRGGGDAA 443
+E+ VV+ Q+NG + S HV ++GK R++L++G A+E YS++MQLCG+RG +
Sbjct: 387 SEFTVVISQMNGQDHASRS-HVFTVGKARIKLSRGWITKAREIYSTSMQLCGVRGNANVP 445
Query: 444 PQAMYWQPRRDLSLVLGFETARERNSAIMLARRFAIDCNIILAGPGD 490
+A++WQ R+ L+ +L FE+ +ERN+AI+LAR +A DCN+ L GP D
Sbjct: 446 AKALFWQLRKGLTFLLTFESEQERNAAIVLARTYAYDCNVTLVGPDD 492
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,480,962
Number of extensions: 372434
Number of successful extensions: 2028
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2044
Number of HSP's successfully gapped: 5
Length of query: 494
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 391
Effective length of database: 8,282,721
Effective search space: 3238543911
Effective search space used: 3238543911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)