BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0633800 Os07g0633800|AK103878
         (72 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73177.1  | chr1:27516721-27517352 REVERSE LENGTH=64            50   2e-07

>AT1G73177.1 | chr1:27516721-27517352 REVERSE LENGTH=64
          Length = 63

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 10 LSLGVLIDIVDEQWMRDTLXXXXXXXXXXMAVKTEEAEDPAPANQESQPAQGDVWRDFTL 69
          +SLG+LIDIVDE+WMRDTL          +AVKT++ E+    NQE+Q A  + WRD  L
Sbjct: 4  VSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEET---NQETQQADAETWRDLAL 60

Query: 70 EN 71
          + 
Sbjct: 61 DT 62



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,390,178
Number of extensions: 33214
Number of successful extensions: 33
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 72
Length of database: 11,106,569
Length adjustment: 44
Effective length of query: 28
Effective length of database: 9,900,265
Effective search space: 277207420
Effective search space used: 277207420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)