BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0626800 Os07g0626800|AK066185
         (397 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09580.1  | chr3:2942614-2944047 REVERSE LENGTH=478            399   e-111

>AT3G09580.1 | chr3:2942614-2944047 REVERSE LENGTH=478
          Length = 477

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/407 (53%), Positives = 274/407 (67%), Gaps = 21/407 (5%)

Query: 1   ASDRLGGRVATDEVDGYRLDRGFQIFLTAYPECRRLLDFPALRLRPFYPGALVFLGAGEP 60
           ASD +GGRV TD VDG+ LDRGFQIF+TAYPE ++LLD+ AL L+ FY GA VF G    
Sbjct: 77  ASDGVGGRVRTDIVDGFFLDRGFQIFITAYPEAKKLLDYEALDLQRFYAGAKVFYGG--K 134

Query: 61  FYLLSDPFRLPLRSLSAVFSPVGTLADKLLVGLARLRAASTPDDVILSSP-ETTTAAHLE 119
           F+ ++DP R    S++++ +P+G++ DK L+ L R R     D+ IL++  E  T   L 
Sbjct: 135 FHTVADPLRHFWDSVASLANPIGSVVDKGLIALTRARVLIKSDEEILTAADEVPTIDLLR 194

Query: 120 KLGFSPSIVERFLRPFLAGIFFDPALDTSSRLFELVFKRLALGDNALPEAGIGAIASQLA 179
           K+GFS +I++RF RPF  GIFFD  L+T+S+LF+ VF+ LALG+N LP  GIG I++QLA
Sbjct: 195 KIGFSETILDRFFRPFFGGIFFDRDLETTSKLFDFVFRCLALGENTLPAMGIGEISNQLA 254

Query: 180 DRLPAGSVRLNSRAAAIGQS--------SVTLDTGETVSGELGVIVAVEQPEAEKLLPQL 231
            +LPA SV LN+R A+I           SV L  G  +  ELGVI+AVEQPE  KLL  +
Sbjct: 255 AKLPAKSVLLNTRVASIEYPNGSGSDPPSVRLQDGSVMKAELGVIIAVEQPEVNKLLDGI 314

Query: 232 --PTIPAKPKKNSERSTVCLYFAA--DKAAVQDPILLLNGSGKGIVNNMFFATNVAPSYA 287
             P I  KP     RST+CLYF A  ++  VQDP+L LNGS  GI+NNMFFATNVA +YA
Sbjct: 315 RDPVI-TKPA----RSTICLYFTAEPNQIPVQDPVLFLNGSNSGIINNMFFATNVARTYA 369

Query: 288 PPGRXXXXXXXXGSFAGRSDADLAGEVVTELAGWFGAGEVASWTHLRTYRIGFAQPDQTP 347
           PPG+        G F  R+D DLA EV+ EL+GWFG   V SW HL+TYRI FAQP+Q P
Sbjct: 370 PPGKALVSVSLIGLFEDRTDDDLAAEVLRELSGWFGESPVMSWKHLKTYRIQFAQPNQCP 429

Query: 348 PTSPAGRDPRVGDGLYMCGDHWCYATFDGALVSGRRAAEALAKDRGL 394
           PT    + PRVG GLY+ GD+   ATFDGALVSGRRA E L ++ GL
Sbjct: 430 PTDLV-KSPRVGSGLYLSGDYMTSATFDGALVSGRRAVEVLLRETGL 475



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,511,346
Number of extensions: 360302
Number of successful extensions: 813
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,337,553
Effective search space: 2467915688
Effective search space used: 2467915688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)