BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0623100 Os07g0623100|AK108461
(281 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09410.3 | chr5:2920893-2927291 FORWARD LENGTH=1067 196 2e-50
AT2G22300.1 | chr2:9471599-9476472 FORWARD LENGTH=1033 187 8e-48
AT5G64220.1 | chr5:25686434-25691903 FORWARD LENGTH=1051 184 3e-47
AT1G67310.1 | chr1:25198182-25203126 REVERSE LENGTH=1017 90 2e-18
AT3G16940.1 | chr3:5781959-5785985 FORWARD LENGTH=846 77 8e-15
AT4G16150.1 | chr4:9148225-9153048 FORWARD LENGTH=924 77 1e-14
>AT5G09410.3 | chr5:2920893-2927291 FORWARD LENGTH=1067
Length = 1066
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 168/286 (58%), Gaps = 17/286 (5%)
Query: 3 CGLGGAEDFAESSSAQLAYRD-SQAESLKDSLSAVRKSTQAAARIFQAFRVESFHRKKVV 61
CG + +E ++A + Y D + SLKDSL+AVR +TQAA R+ Q FR++SF RK++
Sbjct: 788 CGEKAVQTVSERTAAPMTYGDVPEKLSLKDSLTAVRNATQAADRLHQVFRMQSFQRKQLC 847
Query: 62 EYGDDD-CGLSDERTLSLVSIKNAKPGQNDGSHS-AAVRIQNKFRGWKGRKEFMIIRQKI 119
+ GDD+ +SD+ +S + K PGQ D S S AA IQ K+RGWK RKEF++IRQ+I
Sbjct: 848 DIGDDEKIDISDQLAVSFAASKTKNPGQGDVSLSCAATHIQKKYRGWKKRKEFLLIRQRI 907
Query: 120 VKIQAHVRGHQVRKSYRRIVWSVGIVEXXXXXXXXXXXXXXXFQ---PVKQLEGPSPIQQ 176
VKIQAHVRGHQVRK YR ++WSVG++E F+ K +E P+
Sbjct: 908 VKIQAHVRGHQVRKQYRTVIWSVGLLEKIILRWRRKGNGLRGFKRNAVAKTVEPEPPV-- 965
Query: 177 LEGPSQIQPAKXXXXXXXXXLKDGRKQAEGRLQRALARVKSMTQYPEAREQYSRIANRVT 236
S I P + LK+GRKQ E RLQ+AL RVKSM QYPEAR+QY R+ V
Sbjct: 966 ----SAICP-RIPQEDEYDYLKEGRKQTEERLQKALTRVKSMVQYPEARDQYRRLLTVVE 1020
Query: 237 ELQEPQAMMIQ--DDMQSDGAIADGGDFMAELEELCGDGDAPMPTI 280
+E +A ++ + + + DF+ ++E L D D M +I
Sbjct: 1021 GFRENEASSSASINNKEEEAVNCEEDDFI-DIESLLND-DTLMMSI 1064
>AT2G22300.1 | chr2:9471599-9476472 FORWARD LENGTH=1033
Length = 1032
Score = 187 bits (474), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 135/212 (63%), Gaps = 16/212 (7%)
Query: 35 AVRKSTQAAARIFQAFRVESFHRKKVVEYGDDDCGLSDERTLSLVSIKNAKPGQ---NDG 91
AVR +TQAAARI Q FR +SF +K++ E+GD G+S+ER LS+++ K K G+ +D
Sbjct: 792 AVRNATQAAARIHQVFRAQSFQKKQLKEFGDKKLGMSEERALSMLAPKTHKSGRAHSDDS 851
Query: 92 SHSAAVRIQNKFRGWKGRKEFMIIRQKIVKIQAHVRGHQVRKSYRRIVWSVGIVEXXXXX 151
+AA+RIQNKFRG+KGRK+++I RQ+I+KIQAHVRG+Q RK+YR+I+WSVG++E
Sbjct: 852 VQAAAIRIQNKFRGYKGRKDYLITRQRIIKIQAHVRGYQFRKNYRKIIWSVGVLEKVILR 911
Query: 152 XXXXXXXXXXFQPVKQLEGPSPIQQLEGPSQIQPAKXXXXXXXXXLKDGRKQAEGRLQRA 211
F+ +E + E K GRKQ E RLQ+A
Sbjct: 912 WRRKGAGLRGFKSEALVEKMQDGTEKEEDDDF-------------FKQGRKQTEDRLQKA 958
Query: 212 LARVKSMTQYPEAREQYSRIANRVTELQEPQA 243
LARVKSM QYPEAR+QY R+ N V ++QE +
Sbjct: 959 LARVKSMVQYPEARDQYRRLLNVVNDIQESKV 990
>AT5G64220.1 | chr5:25686434-25691903 FORWARD LENGTH=1051
Length = 1050
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 16/236 (6%)
Query: 12 AESSSAQLAYRD-SQAESLKDSLSAVRKSTQAAARIFQAFRVESFHRKKVVEYG-DDDCG 69
AE ++ ++Y D + S+KDSL+AV +TQAA R+ Q FR++SF RK++ E G D+
Sbjct: 787 AERTATPMSYGDVPETLSMKDSLTAVLNATQAADRLHQVFRMQSFQRKQLSELGGDNKFD 846
Query: 70 LSDERTLSLVSIKNAKPGQNDGS-HSAAVRIQNKFRGWKGRKEFMIIRQKIVKIQAHVRG 128
+SDE +S + K K G + G+ H+AAV+IQ K+RGWK RKEF++IRQ+IVKIQAHVRG
Sbjct: 847 ISDELAVSFAAAKTKKSGHSSGAVHAAAVQIQKKYRGWKKRKEFLLIRQRIVKIQAHVRG 906
Query: 129 HQVRKSYRRIVWSVGIVEXXXXXXXXXXXXXXXFQPVKQLEGPSPIQQLEGPSQ-IQPAK 187
HQVRK YR I+WSVG++E F+ + P++ + PA
Sbjct: 907 HQVRKQYRAIIWSVGLLEKIILRWRRKGSGLRGFKR----------DTISKPTEPVCPAP 956
Query: 188 XXXXXXXXXLKDGRKQAEGRLQRALARVKSMTQYPEAREQYSRIANRVTELQEPQA 243
LK+GRKQ E RLQ+AL RVKSM QYPEAR QY R+ V +E +A
Sbjct: 957 --QEDDYDFLKEGRKQTEERLQKALTRVKSMAQYPEARAQYRRLLTVVEGFRENEA 1010
>AT1G67310.1 | chr1:25198182-25203126 REVERSE LENGTH=1017
Length = 1016
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 30/232 (12%)
Query: 28 SLKDSLSAVRKSTQAAARIFQAFRVESFHRKKVVEYGDDDC----GLSDERTLSLVSIKN 83
SLKD+L+AVR + QAAARI AFR SF ++K E C G+ E + ++
Sbjct: 787 SLKDTLAAVRNAAQAAARIQAAFRAHSFRKRKQREAALVACLQEYGMYCEDIEGISAMSK 846
Query: 84 AKPGQNDGSHSAAVRIQNKFRGWKGRKEFMIIRQKIVKIQAHVRGHQVRKSYRRIVWSVG 143
G+ +SAA+ IQ FRG+K RK F+ +RQK+VKIQAHVRG+Q+RK+Y+ I W+V
Sbjct: 847 LTFGKGRNYNSAALSIQKNFRGYKDRKCFLELRQKVVKIQAHVRGYQIRKNYKVICWAVR 906
Query: 144 IVEXXXXXXXXXXXXXXXF-QPVKQLEGPSPIQQLEGPSQIQPAKXXXXXXXXXLKDGRK 202
I++ F Q V+ E LK RK
Sbjct: 907 ILDKVVLRWRRKGVGLRGFRQDVESTE--------------------DSEDEDILKVFRK 946
Query: 203 Q-AEGRLQRALARVKSMTQYPEAREQYSRIANRVT----ELQEPQAMMIQDD 249
Q + + A +RV SM+ PEAR+QY R+ R EL + + ++ +DD
Sbjct: 947 QKVDVAVNEAFSRVLSMSNSPEARQQYHRVLKRYCQTKAELGKTETLVGEDD 998
>AT3G16940.1 | chr3:5781959-5785985 FORWARD LENGTH=846
Length = 845
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 29/211 (13%)
Query: 27 ESLKDSLSAVRKSTQAAARIFQAFRVESFH--RKKVVEYGDDDCGLSDERTLSLVS---I 81
+SLKD+L+A R + +AAARI AFR ++ R V+++ + +E S+++ I
Sbjct: 641 QSLKDALAAYRTAAEAAARIQGAFREKALKAARSSVIQFAN-----KEEEAKSIIAAMKI 695
Query: 82 KNA-KPGQNDGSHSAAVRIQNKFRGWKGRKEFMIIRQKIVKIQAHVRGHQVRKSYRRIVW 140
+NA + AA RIQ +F+ WK R+E++ +R++ ++IQA RG Q R+ Y++I+W
Sbjct: 696 QNAFRKYDTRRKIEAAYRIQCRFQTWKIRREYLNMRRQAIRIQAAFRGLQARRQYKKILW 755
Query: 141 SVGIVEXXXXXXXXXXXXXXXFQPVKQLEGPSPIQQLEGPSQIQPAKXXXXXXXXXLKDG 200
SVG++E Q + + P Q+ K
Sbjct: 756 SVGVLEKAVLRWRQKRKGFRGLQVAAEEDSPGEAQE------------------DFYKTS 797
Query: 201 RKQAEGRLQRALARVKSMTQYPEAREQYSRI 231
++QAE RL+R++ RV++M + +A++ Y R+
Sbjct: 798 QRQAEERLERSVVRVQAMFRSKKAQQDYRRM 828
>AT4G16150.1 | chr4:9148225-9153048 FORWARD LENGTH=924
Length = 923
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 30/250 (12%)
Query: 6 GGAEDFAESSSAQLAYRDSQAESLKDSLSAVRKSTQAAARIFQAFRVESFH-RKKVVEYG 64
G E S+ + + +SLKD+L+A R + +AAARI AFR R V +
Sbjct: 690 GNLETIKAEKSSNPGNANEEEQSLKDTLAAYRTAAEAAARIQGAFREHELKVRSSAVRFA 749
Query: 65 DDDCGLSDERTLSLVSIKNAKPGQNDGSH---SAAVRIQNKFRGWKGRKEFMIIRQKIVK 121
+ +E + ++K +N +AA RIQ +F+ WK R+EF+ +R+K ++
Sbjct: 750 SKE----EEAKNIIAAMKIQHAFRNFEVRRKIAAAARIQYRFQTWKMRREFLNMRKKAIR 805
Query: 122 IQAHVRGHQVRKSYRRIVWSVGIVEXXXXXXXXXXXXXXXFQPVKQLEGPSPIQQLEGPS 181
IQA RG QVR+ Y++I WSVG++E + + L+ P ++ EG
Sbjct: 806 IQAAFRGFQVRRQYQKITWSVGVLEKAILRWRLKR------KGFRGLQVSQPDEK-EGSE 858
Query: 182 QIQPAKXXXXXXXXXLKDGRKQAEGRLQRALARVKSMTQYPEAREQYSRIANRVTELQEP 241
++ K +KQAE RL+R++ +V++M + +A++ Y R+ +L
Sbjct: 859 AVE----------DFYKTSQKQAEERLERSVVKVQAMFRSKKAQQDYRRM-----KLAHE 903
Query: 242 QAMMIQDDMQ 251
+A + D MQ
Sbjct: 904 EAQLEYDGMQ 913
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,173,931
Number of extensions: 177726
Number of successful extensions: 581
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 7
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)