BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0619600 Os07g0619600|AK064123
         (330 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12750.1  | chr4:7498009-7503920 REVERSE LENGTH=1132           129   1e-30

>AT4G12750.1 | chr4:7498009-7503920 REVERSE LENGTH=1132
          Length = 1131

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 120/286 (41%), Gaps = 42/286 (14%)

Query: 17  QVLFPKDYILRKVFRKDGPPLGSEFDPLPHSAPGHLRDTTDDHFYQNQRVIKKRKIVEPT 76
           Q L P  +IL KVFRKDGP LGSEFD LP  A       T     Q Q+V +KRKI E  
Sbjct: 103 QNLLPSSHILAKVFRKDGPSLGSEFDHLPSGARKASWLGTSSVGQQKQKVARKRKISELM 162

Query: 77  TQRSSLPCGDNGPVRKHGAGKGLMTVWHAMYSHSSKIQDGSNFIDETGCL---------- 126
              S     +N  V KHG GKGLMTVW  M  +   +    + +DE   L          
Sbjct: 163 DHTSQDCIQENATVMKHGIGKGLMTVWRVMNPNRRDVSPCVDLLDERATLPQSSARNPPH 222

Query: 127 --RSLRPLDDCGRIEDCDDGKLIQXXXXXXXXXXXXXXPPSNKRKVPSSRVTDPKKHPPM 184
             +  R L    +       KL+Q                 NK         + ++    
Sbjct: 223 QKKKQRQLASILK------QKLLQKRSTEKKRRSIHREAELNK--------DETQREFKE 268

Query: 185 ECHLSVD-ESQSPVLQANQVTXXXXXXXXXXXXQAGPNPLRCSAHLSSSGRHGCPLCK-- 241
            C L+ D E      Q                 + G NPL CS H  SSG HGC LCK  
Sbjct: 269 NCELAADGEVFKETCQTISTLVDDEELEMRERHERG-NPLTCSCHHPSSGSHGCFLCKGI 327

Query: 242 ------------DLLSRFPPSSVKMKQPFSTRPWGSSPEMVKKLFQ 275
                       DLL +FPP+SV+M+ PF   PW SSPE VKKLF+
Sbjct: 328 AMRSSDSSLLFPDLLPKFPPNSVQMRMPFGLHPWNSSPESVKKLFK 373



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,216,560
Number of extensions: 294285
Number of successful extensions: 563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)