BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0618500 Os07g0618500|AK068975
(532 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30000.2 | chr4:14670417-14672397 REVERSE LENGTH=562 621 e-178
AT1G69190.1 | chr1:26013131-26014709 REVERSE LENGTH=485 592 e-169
>AT4G30000.2 | chr4:14670417-14672397 REVERSE LENGTH=562
Length = 561
Score = 621 bits (1602), Expect = e-178, Method: Compositional matrix adjust.
Identities = 288/464 (62%), Positives = 369/464 (79%)
Query: 65 SADQEIVIALGSNVGDRISTFDRALRMMKNSGVNITRHACLYETSPAYVTDQPRFLNSAV 124
S + E+VIALGSN+G+R++ F ALR+MK G+ +TRH+CLYET+P +VTDQPRFLN+AV
Sbjct: 84 STEHEVVIALGSNIGNRMNNFREALRLMKRGGICVTRHSCLYETAPVHVTDQPRFLNAAV 143
Query: 125 RGTTXXXXXXXXXXXXXXXXDIGRTDGIRYGPRPIDLDILLYGKSHISTENLTVPHERIH 184
RG T D+GR DGIRYGPRP+DLDIL YGK IS++ L +PHER+
Sbjct: 144 RGVTKLGPHELLSVLKTIERDMGRKDGIRYGPRPLDLDILFYGKMRISSDKLIIPHERLW 203
Query: 185 ERPFVLAPLVDLLGSSTDDNVEKSWHSLAKCTGGFFESWDKLGGESIIGTEGIKRVLPVG 244
ER FVLAPLVDLLGS+ D++ WHSLA GG F++W++LGGES+IG +GI+RVLP+G
Sbjct: 204 ERSFVLAPLVDLLGSAVDNDTVAHWHSLAIHPGGIFQAWERLGGESLIGQDGIQRVLPIG 263
Query: 245 NRLLDWSERTLVMGVLNLTPDSFSDGGKFQEVEAAIAQTKLLISEGADIIDIGAQSTRPL 304
++L D+S +T VMG+LNLTPDSFSDGGKFQ +++A+++ + +ISEGADIIDIGAQSTRP+
Sbjct: 264 DKLWDFSNKTHVMGILNLTPDSFSDGGKFQSIDSAVSRVRSMISEGADIIDIGAQSTRPM 323
Query: 305 ARRLSADEELERLVPVLDAITGIPEMEGKLLSVDTFYAEVAAEAVKRGVHIVNDVSGGQI 364
A R+S+ EEL+RL+PVL+A+ G+PEME KL+SVDTF +EVA+EA+ G I+NDVS G +
Sbjct: 324 ASRISSQEELDRLLPVLEAVRGMPEMEEKLISVDTFNSEVASEAISNGADILNDVSAGTL 383
Query: 365 DPRILEVVAELGVPYVTMHMRGDPSTMQSEQNLLYGDVCKEVASELYKRVRQAELSGIPL 424
DP + +VVAE GVPY+ MHMRGDP TMQ+++NL Y DVCK+VASELY RVR AELSGIP
Sbjct: 384 DPNMHKVVAESGVPYMAMHMRGDPCTMQNKENLQYDDVCKDVASELYLRVRDAELSGIPA 443
Query: 425 WRIVLDPGIGFSKNSKHNLEVIMGLESIRTEIGKMSLGASHVPILLGPSRKRFLGEICNR 484
WR+++DPGIGFSK+ HNL++IM L IR E+ K S+ SH PIL+GPSRKRFLG+IC R
Sbjct: 444 WRVMIDPGIGFSKSVDHNLDIIMDLPKIREEMAKRSIAVSHAPILVGPSRKRFLGDICGR 503
Query: 485 VNPTERDAATMVVATAGILNGANIVRVHNVKYGVDTAKVSDALS 528
T+RDAAT+ TAGIL GANI+RVHNV++ D AK+ A+S
Sbjct: 504 PEATDRDAATVASVTAGILGGANIIRVHNVRHNADAAKIDTAVS 547
>AT1G69190.1 | chr1:26013131-26014709 REVERSE LENGTH=485
Length = 484
Score = 592 bits (1525), Expect = e-169, Method: Compositional matrix adjust.
Identities = 276/468 (58%), Positives = 367/468 (78%), Gaps = 4/468 (0%)
Query: 68 QEIVIALGSNVGDRISTFDRALRMMKNSGVNITRHACLYETSPAYVTDQPRFLNSAVRGT 127
+E+VIALGSNVG+R++ F ALR+MK+ G+++TRH+CLYET P +VTDQPRFLN+A+RG
Sbjct: 12 EEVVIALGSNVGNRMNNFKEALRLMKDYGISVTRHSCLYETEPVHVTDQPRFLNAAIRGV 71
Query: 128 TXXXXXXXXXXXXXXXXDIGRTD-GIRYGPRPIDLDILLYGKSHISTENLTVPHERIHER 186
T ++GR + G+RYGPRP+DLDIL YGK I ++ L +PHERI ER
Sbjct: 72 TKLKPHELLNVLKKIEKEMGREENGLRYGPRPLDLDILFYGKHKIISDKLIIPHERIWER 131
Query: 187 PFVLAPLVDLLGSSTDDN--VEKSWHSLAKCTGGFFESWDKLGGESIIGTEGI-KRVLPV 243
PFVLAPLVDLLG+ DN + WHSL+ +GG F++W++LGGES++G +GI +RV+P+
Sbjct: 132 PFVLAPLVDLLGTEDIDNDKIVAYWHSLSMHSGGIFQAWERLGGESLLGKDGIIQRVIPI 191
Query: 244 GNRLLDWSERTLVMGVLNLTPDSFSDGGKFQEVEAAIAQTKLLISEGADIIDIGAQSTRP 303
G+ L D+S++T VMG+LNLTPDSFSDGGKFQ V+ A+++ + +ISEG DIIDIGAQSTRP
Sbjct: 192 GDHLWDFSKKTYVMGILNLTPDSFSDGGKFQSVDTAVSRVRSMISEGVDIIDIGAQSTRP 251
Query: 304 LARRLSADEELERLVPVLDAITGIPEMEGKLLSVDTFYAEVAAEAVKRGVHIVNDVSGGQ 363
+A R+S+ EE++RL+PVL + G+ EM+GKL+SVDTF +EVA EA++ G I+NDVSGG
Sbjct: 252 MASRISSQEEIDRLIPVLKVVRGMAEMKGKLISVDTFNSEVALEAIRNGADILNDVSGGS 311
Query: 364 IDPRILEVVAELGVPYVTMHMRGDPSTMQSEQNLLYGDVCKEVASELYKRVRQAELSGIP 423
+D + +VVA+ VPY+ MHMRGDP TMQ+++NL Y ++CK+VA+ELY+RVR+AELSGIP
Sbjct: 312 LDENMHKVVADSDVPYMIMHMRGDPCTMQNKENLEYNEICKDVATELYERVREAELSGIP 371
Query: 424 LWRIVLDPGIGFSKNSKHNLEVIMGLESIRTEIGKMSLGASHVPILLGPSRKRFLGEICN 483
WRI++DPGIGFSK HNL+++M L IR E+ K S+G SH PIL+GPSRKRFLG+IC
Sbjct: 372 AWRIMIDPGIGFSKGIDHNLDIVMELPKIREEMAKKSIGLSHAPILIGPSRKRFLGDICG 431
Query: 484 RVNPTERDAATMVVATAGILNGANIVRVHNVKYGVDTAKVSDALSKGR 531
R +ERDAAT+ TAGIL GANI+RVHNV+ VD A++ DA+ R
Sbjct: 432 RPEASERDAATVACVTAGILKGANIIRVHNVRDNVDAARLCDAMMTKR 479
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,463,726
Number of extensions: 424793
Number of successful extensions: 940
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 936
Number of HSP's successfully gapped: 2
Length of query: 532
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 429
Effective length of database: 8,282,721
Effective search space: 3553287309
Effective search space used: 3553287309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)