BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0615200 Os07g0615200|AK065604
(244 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254 117 6e-27
AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250 110 7e-25
AT1G72450.1 | chr1:27274336-27276136 REVERSE LENGTH=270 95 4e-20
AT1G17380.1 | chr1:5955654-5957070 REVERSE LENGTH=275 92 2e-19
AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188 72 2e-13
AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239 57 8e-09
AT4G14720.1 | chr4:8432452-8434934 REVERSE LENGTH=316 49 3e-06
>AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254
Length = 253
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 127/251 (50%), Gaps = 41/251 (16%)
Query: 10 VGGERAT----SFAMACSLLSRYVRQNGAAAAELGLG------IRGEGEAPRAAPATMSL 59
VG R T SF+ CS LS+Y+++NG+ +L LG + G R TMSL
Sbjct: 11 VGSRRFTGKKPSFSQTCSRLSQYLKENGSFG-DLSLGMACKPDVNGTLGNSRQPTTTMSL 69
Query: 60 LPGEAERKKETME------LFPQ-------SAGFGQQDAITADSAADAREQEPEKRQLTI 106
P EA ++ LFP+ S+ ++D + + + E + LTI
Sbjct: 70 FPCEASNMDSMVQDVKPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTI 129
Query: 107 FYGGKVLVFNDFPADKAKGLMQLASKGSXXXXXXXXXXXXXXVTDNTKAPMA--VPAPVS 164
FY G+V+VFNDF A+KAK ++ LASKG+ + A +A VP P
Sbjct: 130 FYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNI-----ATIANQVPHP-- 182
Query: 165 SLPTAQADAQKPARAN---ASDMPIARKASLHRFLEKRKDRLNAKTPYQ-ASPSDATPVK 220
+ Q+P +++ +++PIAR+ASLHRFLEKRKDR+ +K PYQ P+ A+
Sbjct: 183 ----RKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNP 238
Query: 221 KEPESQPWLGL 231
+ + WLGL
Sbjct: 239 QTTGNMSWLGL 249
>AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250
Length = 249
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 122/239 (51%), Gaps = 29/239 (12%)
Query: 14 RATSFAMACSLLSRYVRQNGAAA-AELGLGIRGEGEAPRAAPATMSLLPGEA-------- 64
R SF+ C+ LSRY+++ G+ LG+ + + P M+L P EA
Sbjct: 14 RKPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQPTMMNLFPCEASGMDSSAG 73
Query: 65 --ERKKETMELFPQSAGFG-------QQDAITADSAADAREQEPEKRQLTIFYGGKVLVF 115
+ K +TM FP+ + F ++D + + E + LTIFYGG+V+VF
Sbjct: 74 QEDIKPKTM--FPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVF 131
Query: 116 NDFPADKAKGLMQLASKGSXXXXXXXXXXXXXXVTDNTKAPMAV-PAPVSSLPTAQADAQ 174
+DF A+KAK ++ LA+KGS + ++ +A P PV S A+ AQ
Sbjct: 132 DDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCS--PAKTAAQ 189
Query: 175 KPARAN----ASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPWL 229
+P + N A ++PIAR+ASLHRFLEKRKDR+ +K PYQ S K P + WL
Sbjct: 190 EPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSK--PTNPAWL 246
>AT1G72450.1 | chr1:27274336-27276136 REVERSE LENGTH=270
Length = 269
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 102/211 (48%), Gaps = 22/211 (10%)
Query: 16 TSFAMACSLLSRYVRQNGA-AAAELGLGIRGEGEAPRAAPATMSLLPGEAE--RKKETME 72
++F+ CSLLSRY+++ G+ +GL + + E A L G+ +K ET E
Sbjct: 10 SNFSQRCSLLSRYLKEKGSFGNINMGLARKSDLEL-----AGKFDLKGQQNVIKKVETSE 64
Query: 73 LFP----QSAGFGQQDAITADSAADAREQEPEK-------RQLTIFYGGKVLVFNDFPAD 121
P Q G+ T D A EP K QLTIF+GGKV+VFN+FP D
Sbjct: 65 TRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPED 124
Query: 122 KAKGLMQLASKGSXXXXXXXXXXXXXXVTDNTKAPMAVPAPVSSLPTAQADAQKPARANA 181
KAK +M++A + + + K+ + +P + + Q+ + +
Sbjct: 125 KAKEIMEVAKEANHVAVDSKNSQSHMNL---DKSNVVIPDLNEPTSSGNNEDQETGQQHQ 181
Query: 182 SDMPIARKASLHRFLEKRKDRLNAKTPYQAS 212
IAR+ASLHRF KRKDR A+ PYQ +
Sbjct: 182 VVERIARRASLHRFFAKRKDRAVARAPYQVN 212
>AT1G17380.1 | chr1:5955654-5957070 REVERSE LENGTH=275
Length = 274
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 16 TSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPATMSLLPGEAERKKETMELFP 75
+ F CSLLSRY+++ G+ + LG+ + ++ A P PG K+ M
Sbjct: 16 SDFTRRCSLLSRYLKEKGSFG-NIDLGLYRKPDSSLALPGKFDP-PG----KQNAM---- 65
Query: 76 QSAGFGQQDAITAD-----SAADAREQEPEKRQLTIFYGGKVLVFNDFPADKAKGLMQLA 130
AG + + T+ AD E +P QLTIF+GGKVLV+N+FP DKAK +M++A
Sbjct: 66 HKAGHSKGEPSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPVDKAKEIMEVA 125
Query: 131 SKGSXXXXXXXXXXXXXXVTDNTKAPMAVPAPVSSLPTAQADAQKPARANASDMP----I 186
K + +N K+ M +P + PT K + I
Sbjct: 126 -KQAKPVTEINIQTPINDENNNNKSSMVLPD--LNEPTDNNHLTKEQQQQQEQNQIVERI 182
Query: 187 ARKASLHRFLEKRKDRLNAKTPYQAS 212
AR+ASLHRF KRKDR A+ PYQ +
Sbjct: 183 ARRASLHRFFAKRKDRAVARAPYQVN 208
>AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188
Length = 187
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 103 QLTIFYGGKVLVFNDFPADKAKGLMQLASKG---------SXXXXXXXXXXXXXXVTDNT 153
QLTIF+GG V VF+ P++K + ++++A+K S T N
Sbjct: 57 QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSISPVSSPALNRAPSFSSTSNV 116
Query: 154 KAPMAVPAPVSSLPTAQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQAS 212
+P A P P+ + ++ A D+PIAR+ SL RFLEKR+DRL K PY S
Sbjct: 117 ASPAAQPFPIQPISFCRSTA---------DLPIARRHSLQRFLEKRRDRLVNKNPYPTS 166
>AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239
Length = 238
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 103 QLTIFYGGKVLVFNDFPADKAKGLMQLASKGSXXXXXXXXXXXXXXVTDNTKAPMAVPAP 162
QLTI +GG VF+ PA+K + ++ +A+ T+ PA
Sbjct: 131 QLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKA--------------TETINLTSINPAL 176
Query: 163 VSSLPTAQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDA 216
++ + ++A A + +D+PIAR+ SL RF EKR+ R PY A+ S+A
Sbjct: 177 KRAI--SFSNASTVACVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEA 228
>AT4G14720.1 | chr4:8432452-8434934 REVERSE LENGTH=316
Length = 315
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 103 QLTIFYGGKVLVFNDFPADKAKGLMQLASKGSXXXXXXXXXXXXXXVTDNTKAPMAVPAP 162
Q+TIFY GKV V++ P +KA+ +M A+ +K M V P
Sbjct: 157 QMTIFYSGKVNVYDGVPPEKARSIMHFAANPIDLPENGIFASSRMISKPMSKEKM-VELP 215
Query: 163 VSSLPTAQA--DAQKPARANASDMPIARKASLHRFLEKRKDRLNAKT 207
L A A D+ +AN RK SL R+LEKRKDR +KT
Sbjct: 216 QYGLEKAPASRDSDVEGQAN-------RKVSLQRYLEKRKDRRFSKT 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,696,895
Number of extensions: 176453
Number of successful extensions: 464
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 7
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)