BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0611600 Os07g0611600|AK102547
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01590.1  | chr4:689077-690192 REVERSE LENGTH=201               84   5e-17
AT4G35680.1  | chr4:16917938-16919749 FORWARD LENGTH=504           59   1e-09

>AT4G01590.1 | chr4:689077-690192 REVERSE LENGTH=201
          Length = 200

 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 7/133 (5%)

Query: 17  YGFDHPAKHTPHEDFPDITLPEMTCARATMEEKALIQSTLKFEDFWKTSCYHLEED-VPK 75
           YG D+  K  P   FP+ITLP+    ++   +  L+QS   F  FW+ S YHL +  V K
Sbjct: 13  YGGDY-GKPEPFVIFPEITLPD---PKSISTDSQLVQSYFTFNKFWRNSPYHLGDGGVSK 68

Query: 76  KKNDDKEIERYSD--RKRKTHSKREALASYLILTPANFPVELVQGSKRGQPSSKKLRWDR 133
           K+ +   IERYSD  + +   +K  +   +L+L P NFP EL+  ++R Q   K+ +W +
Sbjct: 69  KEKESLNIERYSDSLKPKMKSNKNGSFFDFLVLRPDNFPKELLGDTRREQRPVKRAKWSQ 128

Query: 134 SSDDQAFEVFEKL 146
            +D Q  +VFEKL
Sbjct: 129 EADLQKLDVFEKL 141



>AT4G35680.1 | chr4:16917938-16919749 FORWARD LENGTH=504
          Length = 503

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 25/131 (19%)

Query: 17  YGFDHPAKHTPHEDFPDITLPEMTCARATMEEKALIQSTLKFEDFWKTSCYHL-EEDVPK 75
           YG D+  K  P   FP+ITLP+     +T  +  ++QS   F  FW  S YHL +  V K
Sbjct: 338 YGGDY-GKPEPFVIFPEITLPDPKSI-STDSQLVVVQSYFTFNKFWMNSPYHLCDGGVSK 395

Query: 76  KKNDDKEIERYSDRKRKTHSKREALASYLILTPANFPVELVQGSKRGQPSSKKLRWDRSS 135
           K+    +IER                      P NF  ELV  ++R Q   K+ +W + +
Sbjct: 396 KEKASLDIER----------------------PDNFSKELVGDTRREQRPVKRAKWSQEA 433

Query: 136 DDQAFEVFEKL 146
           D Q  +VFEKL
Sbjct: 434 DLQKLDVFEKL 444



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,376,221
Number of extensions: 131072
Number of successful extensions: 536
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 109 (46.6 bits)