BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0608900 Os07g0608900|AK068639
         (85 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26350.1  | chr2:11217767-11220415 REVERSE LENGTH=382          108   7e-25

>AT2G26350.1 | chr2:11217767-11220415 REVERSE LENGTH=382
          Length = 381

 Score =  108 bits (269), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 60/72 (83%)

Query: 9   GLYYHLPKRAAGIRYVFIGKPMIQRPRYQILGIFLLIQLCILGAERLRRSNLSTIASSIN 68
           G YYH+ KRA+G+RYVFIGK + QRPRYQILG+FLLIQLCIL AE LRRSNLS+I SSI 
Sbjct: 220 GFYYHISKRASGVRYVFIGKQLNQRPRYQILGVFLLIQLCILAAEGLRRSNLSSITSSIQ 279

Query: 69  QISSGSYPSSRG 80
           Q S GSY +S G
Sbjct: 280 QASIGSYQTSGG 291



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.143    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,692,677
Number of extensions: 54240
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 85
Length of database: 11,106,569
Length adjustment: 56
Effective length of query: 29
Effective length of database: 9,571,273
Effective search space: 277566917
Effective search space used: 277566917
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)