BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0606900 Os07g0606900|016-059-F04
         (366 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16380.1  | chr4:9254638-9255955 FORWARD LENGTH=255             52   5e-07

>AT4G16380.1 | chr4:9254638-9255955 FORWARD LENGTH=255
          Length = 254

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 61  DKISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGP-FDADKVCK 119
           +K++ + L VDL+C +CYKK+++VLC+      I+   +DEK+N V++       +++  
Sbjct: 7   EKVTMMKLKVDLDCAKCYKKVKKVLCKF---PQIRDQLFDEKSNIVIIKVVCCSPERIMD 63

Query: 120 KLCCKAGRIIKDMQV 134
           KLC K G  IK +++
Sbjct: 64  KLCSKGGGSIKTIEI 78



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,424,882
Number of extensions: 110845
Number of successful extensions: 289
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 3
Length of query: 366
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,364,969
Effective search space: 2225081754
Effective search space used: 2225081754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)