BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0604400 Os07g0604400|J075149E16
         (104 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15630.1  | chr5:5084842-5086545 FORWARD LENGTH=432            134   1e-32
AT5G60920.1  | chr5:24511466-24513932 REVERSE LENGTH=457          130   2e-31
AT3G02210.1  | chr3:409352-411478 REVERSE LENGTH=453              126   2e-30
AT3G29810.1  | chr3:11728212-11730158 FORWARD LENGTH=442          121   9e-29
AT1G09790.1  | chr1:3168568-3170819 REVERSE LENGTH=455            105   5e-24

>AT5G15630.1 | chr5:5084842-5086545 FORWARD LENGTH=432
          Length = 431

 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 65/78 (83%)

Query: 4   PLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVF 63
           PLLQCT HMCPVRVHWHVK NY++YWR KI I NFNYRMN+T WTL  QHPNL+N+T+VF
Sbjct: 267 PLLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLNNVTQVF 326

Query: 64  SFDYKPVVSYGSISKYFM 81
           SFDYKPV  YGSI+   M
Sbjct: 327 SFDYKPVSPYGSINDTGM 344



>AT5G60920.1 | chr5:24511466-24513932 REVERSE LENGTH=457
          Length = 456

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 64/78 (82%)

Query: 4   PLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVF 63
           PL+QCT HMCP+RVHWHVK NY+EYWR KITI NFNYR+NYT W LVAQHPNLDNIT++F
Sbjct: 289 PLVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNLDNITQIF 348

Query: 64  SFDYKPVVSYGSISKYFM 81
           SF+YK +  Y  ++   M
Sbjct: 349 SFNYKSLTPYAGLNDTAM 366



>AT3G02210.1 | chr3:409352-411478 REVERSE LENGTH=453
          Length = 452

 Score =  126 bits (316), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 62/74 (83%)

Query: 4   PLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVF 63
           PL+QCT HMCPVR+HWHVK+NY++YWR K+TI NFNY MNY+ W LV QHPN DN+T+ F
Sbjct: 284 PLVQCTKHMCPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQWNLVVQHPNFDNLTQTF 343

Query: 64  SFDYKPVVSYGSIS 77
           SF+YKP+  Y SI+
Sbjct: 344 SFNYKPLTPYASIN 357



>AT3G29810.1 | chr3:11728212-11730158 FORWARD LENGTH=442
          Length = 441

 Score =  121 bits (303), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 62/78 (79%)

Query: 4   PLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVF 63
           PLLQCT HMCP+RVHWHVK +Y+EYWR K+ I NFNY MNY+ W LV QHPN DN+T++F
Sbjct: 275 PLLQCTQHMCPIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQWNLVVQHPNFDNLTKLF 334

Query: 64  SFDYKPVVSYGSISKYFM 81
           SF+YKP+  Y +I+   M
Sbjct: 335 SFNYKPLNPYLNINDTAM 352



>AT1G09790.1 | chr1:3168568-3170819 REVERSE LENGTH=455
          Length = 454

 Score =  105 bits (262), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query: 3   APLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEV 62
           +P+++C+ HMCP+R+HWHVK+NYREYWR KIT  NFN   NYT W LV  HPNL ++ +V
Sbjct: 280 SPVVKCSDHMCPIRIHWHVKVNYREYWRVKITATNFNTMKNYTNWNLVVLHPNLKSVQQV 339

Query: 63  FSFDYKPVVSY 73
           FSF+YK +  Y
Sbjct: 340 FSFNYKSLTPY 350



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,028,407
Number of extensions: 67737
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 5
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)