BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0598200 Os07g0598200|AK066942
(248 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39360.1 | chr5:15753313-15754062 REVERSE LENGTH=250 387 e-108
AT5G15440.1 | chr5:5013158-5014131 FORWARD LENGTH=294 381 e-106
AT3G63060.1 | chr3:23300638-23301456 REVERSE LENGTH=273 184 5e-47
>AT5G39360.1 | chr5:15753313-15754062 REVERSE LENGTH=250
Length = 249
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 175/247 (70%), Positives = 215/247 (87%), Gaps = 1/247 (0%)
Query: 2 VLVVKQHRCMHSASCVCIKGHLSEDALFLVFRHMNWNPRLIAVLSCVCKWFDEVAKQVLW 61
+++ KQ+RC+HSA+C C KGHLSE+ LFL+ +H+NWNP +IA LSCVCKWFD++AK++LW
Sbjct: 1 MIIAKQYRCIHSATCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLW 60
Query: 62 KEFCHARAPKMMLDLHSGGSHIVDGNWKALGKLLIYCNGCTKGGLFNNIHVPGHFVFRTR 121
KEFC ARAPKMM DL S GSH VDG+W+ALGKLLIYC+G +KGGLFN++ + GHFV RTR
Sbjct: 61 KEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISGHFVHRTR 120
Query: 122 FSRTAGKSFLPQQCR-NDVLYVSDPCEHLDQGDEGDLGFFRGIFMSFATSKVKKMLIEKR 180
FSRT+G+SFLP QCR +D+LYVSDPCEHLDQG++GDLGFFRGIF SF+ SKV+K+LI+K
Sbjct: 121 FSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKG 180
Query: 181 ARFHPSESCPYCKAKLWSMLEANMSPGSSSARLGAYEDSVEYFVCLNGHVIGIGTLLPLS 240
FHP+E CPYCKAKLWSML+A M P S+S RLGAYEDS+EY+VCLNGH++G+ TLLPLS
Sbjct: 181 TPFHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPLS 240
Query: 241 DSEEVPE 247
DSE E
Sbjct: 241 DSEGASE 247
>AT5G15440.1 | chr5:5013158-5014131 FORWARD LENGTH=294
Length = 293
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 174/249 (69%), Positives = 208/249 (83%), Gaps = 2/249 (0%)
Query: 2 VLVVKQHRCMHSASCVCIKGHLSEDALFLVFRHMNWNPRLIAVLSCVCKWFDEVAKQVLW 61
+++ KQ+ C HS SC C KGHL+ED L LVF+H+NWNP+L+A LSCVC+WFD+ AK+VLW
Sbjct: 1 MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLW 60
Query: 62 KEFCHARAPKMMLDLHSGGSHIVDGNWKALGKLLIYCNGCTKGGLFNN-IHVPGHFVFRT 120
KEFC RAPKMMLDL S GSH +DGNW+ALGKLLIYC+GCT+GGLFN+ + +PGHFV+RT
Sbjct: 61 KEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRT 120
Query: 121 RFSRTAGKSFLPQQCRNDVLYVSDPCEHLDQGDEGDLGFFRGIFMSFATSKVKKMLIEKR 180
RFSRT G+S LP QCR DVLYV DPCEHLDQG+EGD+G FRGIF SF TSKV+K++I K
Sbjct: 121 RFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKA 180
Query: 181 ARFHPSESCPYCKAKLWSMLEANMSPGSSSARLGAYEDSVEYFVCLNGHVIGIGTLLPLS 240
FHPSE CPYCKAKLWSML+A + P S+ RL AYED +EYFVCLNGH++GI TL PLS
Sbjct: 181 VPFHPSEVCPYCKAKLWSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLS 240
Query: 241 DSEE-VPEE 248
DSE+ +P E
Sbjct: 241 DSEDAIPSE 249
>AT3G63060.1 | chr3:23300638-23301456 REVERSE LENGTH=273
Length = 272
Score = 184 bits (466), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 133/223 (59%), Gaps = 2/223 (0%)
Query: 21 GHLSEDALFLVFRHMNWNPRLIAVLSCVCKWFDEVAKQVLWKEFCHARAPKMMLDLHSGG 80
G +E L LVF ++W+ + ++ + + F +A+++LW+ C RAP M+ L
Sbjct: 33 GIENERVLVLVFESISWDIHTLCTIASLSRRFCAIARRILWRRLCVNRAPGMVAALSGED 92
Query: 81 -SHIVDGNWKALGKLLIYCNGCTKGGLFN-NIHVPGHFVFRTRFSRTAGKSFLPQQCRND 138
S +DG W AL KL+ +C G FN + GHF +RFS+T+G+ FLP+ CR D
Sbjct: 93 PSGRIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFACESRFSKTSGRFFLPKNCRRD 152
Query: 139 VLYVSDPCEHLDQGDEGDLGFFRGIFMSFATSKVKKMLIEKRARFHPSESCPYCKAKLWS 198
+LY+SDPCEH G + LG FRG+F F SK ++ L+ ++A CPYC ++WS
Sbjct: 153 LLYMSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVRRQAALEEKVRCPYCGGRVWS 212
Query: 199 MLEANMSPGSSSARLGAYEDSVEYFVCLNGHVIGIGTLLPLSD 241
M A + P S++ RLG+ E +E+FVC+NGH+ G L+PLS
Sbjct: 213 MTAARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIPLSS 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.139 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,958,955
Number of extensions: 248930
Number of successful extensions: 596
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)