BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0588300 Os07g0588300|Os07g0588300
(640 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19610.1 | chr3:6812493-6814660 REVERSE LENGTH=641 115 8e-26
AT1G08760.1 | chr1:2805478-2808409 FORWARD LENGTH=749 108 9e-24
AT1G70340.1 | chr1:26504567-26506389 REVERSE LENGTH=511 85 1e-16
AT1G23790.1 | chr1:8410099-8411917 FORWARD LENGTH=519 82 7e-16
AT4G13370.1 | chr4:7777916-7780334 REVERSE LENGTH=674 82 1e-15
AT3G14170.1 | chr3:4696115-4697989 REVERSE LENGTH=506 78 2e-14
>AT3G19610.1 | chr3:6812493-6814660 REVERSE LENGTH=641
Length = 640
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 163/333 (48%), Gaps = 45/333 (13%)
Query: 259 GGVKDRRPVAPRRRGNSVSPSKSGPNSTITQNDDPMESVRRKAEKAFNVLSKRASAKMTR 318
GG++++ RRR VSPS S S ++ K+ N+L +++ T
Sbjct: 275 GGIEEKSSSRTRRRDVVVSPSPRWSKSL---------SYGSRSNKSKNLLPPKSN---TF 322
Query: 319 ESSNCTVATPQSAAASSSIKWCESNVMWSTLSSSLLKHGKEAVKQRDMALQAVLDGLLEA 378
ESS+ P S S W E+ ++W +L ++ GKE ++QRD A++A LLEA
Sbjct: 323 ESSD-----PISRKRS----WTETEILWDSLPPKVVNLGKEILRQRDTAIRAASQALLEA 373
Query: 379 STTEKLIKCLSTYSEL---QSDKEENPKELIDRFLKFSQELDHAIFIAQSQTKIRHVKAC 435
S E+L+KCL +YSEL ++ +EN + I FL F EL + I QS + + C
Sbjct: 374 SAAERLLKCLRSYSELSDRRNQHQENQQPPIQDFLSFQDELSKSRLIIQSLS-TEKTEHC 432
Query: 436 GSNXXXXXXXXXXXXXXXDRKQSAILWIREAIEADLSPFS-SHTRPTESPKLSLAESKPM 494
+N +R++ A WI+ A+ DL S S ++PT+SP K +
Sbjct: 433 NAN---------IVKTGDERREKATQWIKSALATDLKLVSLSASKPTQSPG-----RKGL 478
Query: 495 TPLFCCSKPK-CNCSKRSSRKASDGSSQGSNMSAAMDLAVALRSECNCWFLKYIDKFLDD 553
T + S + N S+ +SR G + A+ +L L+ E W+L ++K+LD+
Sbjct: 479 TLIAQESDNREGNASESNSRL---GEIKERLSRASSELRNWLKEEGRSWYLNRVEKYLDE 535
Query: 554 IESETMYAPCDSQVAG-LLQQLKRVDDWLNRVA 585
I + T + S+ G + Q+KRV DWL+ +
Sbjct: 536 ISNGTKWREMRSEEVGETMYQIKRVSDWLDTIV 568
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 57 VLLQVTNITPALSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLILTNGLHIGQVIEV 116
VLLQ+ I P L+ + + GF+LR++DS S YVSL + +DL+L + L IGQ+I V
Sbjct: 58 VLLQIRCIIPVLAAGGLWP-NKGFFLRITDSTHSIYVSLPREENDLVLYDKLQIGQLIFV 116
Query: 117 EHLVPSVPAPVLRHFRVLPGRYPC 140
E L + P P+++ R PGR C
Sbjct: 117 EKLEFAYPVPMIKGIRPTPGRRAC 140
>AT1G08760.1 | chr1:2805478-2808409 FORWARD LENGTH=749
Length = 748
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 150/301 (49%), Gaps = 41/301 (13%)
Query: 338 KWCESNVMWSTLSSSLLKHGKEAVKQRDMALQAVLDGLLEASTTEKLIKCLSTYSELQSD 397
+ +N+ WS+L SL + G+E ++ R+ A ++ L EAS +E L++CL YS+L S
Sbjct: 409 RLAAANIQWSSLPPSLSRMGQEVLRHREAAQVVAIEALQEASASESLLQCLIMYSDLLST 468
Query: 398 -KEENPKELIDRFLKFSQELDHAIFIAQSQTKIRHVKACGSNXXXXXXXXXXXXXXXDRK 456
KE++P ++++FLK L + I +S +K+ + + N +++
Sbjct: 469 AKEDDPLPVVEQFLKLHSGLKNVQVITESLSKLLSLMSSPDNEENRSEEAIKAAS--EKQ 526
Query: 457 QSAILWIREAIEADLSPFSSHTRPTESPKLSLAESKPMTPL-----FCCSKPKCNCSKR- 510
+ A W++ A+ +LSPFS ++ ++ KL+ + SKP+ L SK + N +
Sbjct: 527 KLAASWVQAALVTNLSPFSVYS--SKQAKLAASRSKPVIILESPGNNSSSKTRGNIQNKP 584
Query: 511 -------------------SSRKASD--GSS-------QGSNMSAAMDLAVALRSECNCW 542
SS+KA+ GS +G+ ++ A DLA L+ W
Sbjct: 585 TIGSKLVAQGMIRKHRENSSSQKATSVAGSESPPLNWVKGNGLNEATDLAEKLQMVSQDW 644
Query: 543 FLKYIDKFLDD--IESETMYAPCDSQVAGLLQQLKRVDDWLNRVALHERMLSVDRTNKDI 600
FL ++++FLD I S ++ + Q+AG+L QLK V+DWL+ + E + +K+
Sbjct: 645 FLGFVERFLDADVITSSSLSLSDNGQIAGMLSQLKSVNDWLDEIGSKEDEEGLQEVSKET 704
Query: 601 M 601
+
Sbjct: 705 I 705
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 58 LLQVTNITPALSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLILTNGLHIGQVIEVE 117
LLQV +I PAL+G F + GFYL++SDS+ + YVSL +HDDLIL++ + +GQ I V+
Sbjct: 30 LLQVISIVPALAGGELFP-NQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQYIHVD 88
Query: 118 HLVPSVPAPVLRHFRVLPGRYPCI 141
+ S P P+LR R +PGR+PC+
Sbjct: 89 RVESSSPVPILRGVRPVPGRHPCV 112
>AT1G70340.1 | chr1:26504567-26506389 REVERSE LENGTH=511
Length = 510
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 22 ALRPGSLQRLLRXXXXXXXXXXXXXXXRSSRGGGRVLLQVTNITPALSGANPFSGHHGFY 81
AL PG LQ+L++ + +R +LQVT+I P GF
Sbjct: 3 ALAPGILQKLIQGMKTGI---------KPTREHRSSMLQVTDIVPIDLDEKSLEPKQGFL 53
Query: 82 LRLSDSARSCYVSLHADHDDLILTNGLHIGQVIEVEHLVPSVPAPVLRHFRVLPGRYPCI 141
+++SDS+ S YVSL +D DD++L+N L +GQ I V+ L P P PV++ + +PGR+P +
Sbjct: 54 IKISDSSHSIYVSLPSDQDDVVLSNKLQLGQFIYVDRLEPGSPVPVIKGAKPIPGRHPLL 113
>AT1G23790.1 | chr1:8410099-8411917 FORWARD LENGTH=519
Length = 518
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 22 ALRPGSLQRLLRXXXXXXXXXXXXXXXRSSRGGGRVLLQVTNITPALSGANPFSGHHGFY 81
AL PG LQ+L+ RSS LLQVT+I P GF+
Sbjct: 3 ALAPGILQKLI---DGMKTGVKPTGEHRSS------LLQVTDIVPIDLDEKNLLPKQGFF 53
Query: 82 LRLSDSARSCYVSLHADHDDLILTNGLHIGQVIEVEHLVPSVPAPVLRHFRVLPGRYPCI 141
+++SDS+ S YVSL +D DD +L+N + +GQ I V+ L P P P+++ R +PGR+P +
Sbjct: 54 IKVSDSSHSIYVSLPSDQDDDVLSNKMQLGQFIYVDRLDPGTPVPIIKGARPIPGRHPLL 113
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 285 STITQNDDPMESVRRKAEKAFNVLSKRASAKMTRESSNCTVATPQSAAASSSIKWCESNV 344
S+ +ND P SVR + A ++L A P+S + S ++ E ++
Sbjct: 243 SSAKKNDSPPPSVRTRRATAASLLEDEREA-------------PKSTSKYSKLEKPEKSL 289
Query: 345 MWSTLSSSLLKHGKEAVKQRDMALQAVLDGLLEASTTEKLIKCLSTYSEL-QSDKEENPK 403
+L L KEA++QR+ A + L L EA+TTE +++ L T++ L +S K + P
Sbjct: 290 ---SLPGRLSTLSKEAMQQRETAQKIALQALREATTTETVVRHLKTFANLSKSAKADCPA 346
Query: 404 ELIDRFLKFSQELDHAIFIAQSQTKIRHVKACGS 437
D+FL+F + I+++ +I ++A S
Sbjct: 347 ACFDKFLEFHSQ------ISETMNEIASIEAAAS 374
>AT4G13370.1 | chr4:7777916-7780334 REVERSE LENGTH=674
Length = 673
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 124/258 (48%), Gaps = 45/258 (17%)
Query: 338 KWCESNVMWSTLSSSLLKHGKEAVKQRDMALQAVLDGLLEASTTEKLIKCLSTYSELQS- 396
KW + +V ++S L K GKEA+K+RD A +A L EA+ E +I+CLS +SEL S
Sbjct: 419 KWTDGSVPLDSISDELAKLGKEAMKRRDFAAKAAARALEEANANECIIRCLSKFSELSSA 478
Query: 397 DKEENPKELIDRFLKFSQELDHAIFIAQSQTKIRHVKACGSNXXXXXXXXXXXXXXXDRK 456
K NP +I+ FLK +++ +++ K N D++
Sbjct: 479 SKVGNPLRIINEFLKIYEDV------------MKYSKIASEN---------SFSLSSDQQ 517
Query: 457 QSAILWIREAIEADLSPFS---SHTRPTESPKLSLAESKPMTPLFCCSKPKCNCSKRSSR 513
LW+ A+ +L S SH P+ SL +S P S R S
Sbjct: 518 NPISLWVEAALATNLEVVSLVKSHESPS-----SLKKSMP-----------TRLSPRPSS 561
Query: 514 KASDGSSQGSNMSAAMD---LAVALRSECNCWFLKYIDKFLDDIESETMYAPCDSQVAGL 570
K + +++ + AV L+SE WF++++++ LD+ ++ + S +A +
Sbjct: 562 KTDNIVGMWTDLDGLKETAKFAVNLQSEMQVWFIEFVEESLDN-KNAAKRSLDGSSIAAV 620
Query: 571 LQQLKRVDDWLNRVALHE 588
L QLK+V++WL+RV+ ++
Sbjct: 621 LSQLKQVNEWLDRVSSNQ 638
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 58 LLQVTNITPALSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLILTNGLHIGQVIEVE 117
+LQVT I PAL+G++ + + GFY+++SDS S YVSL DLIL+N L +GQ I +E
Sbjct: 30 ILQVTGIVPALAGSDLWP-NQGFYVQISDSLNSTYVSLSERDTDLILSNRLQLGQFIYLE 88
Query: 118 HLVPSVPAPVLRHFRVLPGRYPCIQQ-EP 145
L + P P R + GR+ + + EP
Sbjct: 89 RLEFATPVPRAAGIRPVAGRHAFVGKPEP 117
>AT3G14170.1 | chr3:4696115-4697989 REVERSE LENGTH=506
Length = 505
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 52 RGGGR-VLLQVTNITPALSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLILTNGLHI 110
RG R VLLQV +I PAL+G+ + + GF++++SDS+ S YVSL + ++LIL N L I
Sbjct: 23 RGEYRSVLLQVISIVPALAGSELWP-NQGFFIKVSDSSHSTYVSLSNEDNELILNNKLGI 81
Query: 111 GQVIEVEHLVPSVPAPVLRHFRVLPGRYPCI 141
GQ V+ L P PVL R + GR+P +
Sbjct: 82 GQFFYVDKLDAGTPVPVLVGVRPISGRHPFV 112
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,655,631
Number of extensions: 392100
Number of successful extensions: 1431
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 11
Length of query: 640
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 535
Effective length of database: 8,227,889
Effective search space: 4401920615
Effective search space used: 4401920615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)