BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0584000 Os07g0584000|AK073870
(110 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129 121 6e-29
AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130 119 3e-28
AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131 118 7e-28
AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163 117 9e-28
AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107 113 2e-26
AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122 107 1e-24
AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106 77 2e-15
>AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129
Length = 128
Score = 121 bits (304), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
Query: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
MG LFV L G V+ CK+C A + I+SK F +HGRAYLFD+VVNV++G +E R+
Sbjct: 1 MGRLFVIDLEGL-VYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRV 59
Query: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMML 107
++TG HTV DI+C C L+GW+YE AY + QKYKEGK+ILE+ +L
Sbjct: 60 MITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVL 106
>AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130
Length = 129
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
MG +F L G + ++C+FC A PD +VS+ F R G+AYLF+ VN+S+GP E+RL
Sbjct: 1 MGRIFTVELEG-RSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59
Query: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKE 109
+++G+HTV DI+C CC + +GW+YE A+ + QKYKEGK++LE+ ++ E
Sbjct: 60 MLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDE 108
>AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131
Length = 130
Score = 118 bits (295), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
MG LFV +L G K++ CK C A+ + I+SK F +HG+AYLF+ V NVS+G E+RL
Sbjct: 1 MGRLFVVNLEG-KIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERL 59
Query: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEK 103
+MTG HTV DI+C C ++GW+YE A+ ++QKYKEGK +LE+
Sbjct: 60 MMTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLER 102
>AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163
Length = 162
Score = 117 bits (294), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
MG LF+ +L G K + CK C + A D +VSK F+ RHG+AYLF VVNV G +EDR+
Sbjct: 34 MGRLFLVNLEG-KSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRM 92
Query: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKH 104
+MTG+HTV DIYC C +GW+YE A+ ++QKYKEGK +LE++
Sbjct: 93 MMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERY 136
>AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107
Length = 106
Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 68/99 (68%)
Query: 11 GPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRLLMTGLHTVND 70
GP+++ C C D I+SK F+GR GRA+LF +N+ +GP+EDR L+TGLHTV D
Sbjct: 6 GPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVAD 65
Query: 71 IYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKE 109
I C C LGW+YE+AY QKYKEGK+I EK ++KE
Sbjct: 66 ISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKE 104
>AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122
Length = 121
Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
MG +F+ L G ++ CK C ++ I+SK F+ ++GRAYLF++VVNVS+G +EDR+
Sbjct: 1 MGRVFMVDLEG-NIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRM 59
Query: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILE 102
++TGLH V DI+C C +GW+YE A+ + QKYKEGK +LE
Sbjct: 60 MITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLE 101
>AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106
Length = 105
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 7 ESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRLLMTGLH 66
++LP + C+ C A + ++SK+F G G A++F +NV +GP+ R L+TG +
Sbjct: 5 KTLP---TYFCRNCENPLALGEDLISKKFVGASGPAFMFSHAMNVVVGPKIGRKLITGSY 61
Query: 67 TVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLK 108
V D+ CS C LGW+Y + + Q+YKEG +++EK + K
Sbjct: 62 VVADVMCSKCGETLGWKYVETFDLKQRYKEGMFVIEKLKLTK 103
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,516,627
Number of extensions: 93344
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 7
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)