BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0571500 Os07g0571500|J033127C11
         (84 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14950.1  | chr4:8545517-8547722 FORWARD LENGTH=417             79   4e-16
AT1G05360.1  | chr1:1564816-1567278 FORWARD LENGTH=417             77   3e-15

>AT4G14950.1 | chr4:8545517-8547722 FORWARD LENGTH=417
          Length = 416

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 1   VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQVCYL 43
           VPNPLFDLAGI+CGQF IPFW+FFLATLIGKA+IK +IQ  ++
Sbjct: 267 VPNPLFDLAGIMCGQFGIPFWEFFLATLIGKAIIKTHIQTIFI 309



>AT1G05360.1 | chr1:1564816-1567278 FORWARD LENGTH=417
          Length = 416

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 38/43 (88%)

Query: 1   VPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVYIQVCYL 43
           VPNPLFDLAGI+CGQF  PFW+FFLATLIGKA+IK +IQ  ++
Sbjct: 259 VPNPLFDLAGIMCGQFEKPFWEFFLATLIGKAIIKTHIQTVFI 301



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,639,944
Number of extensions: 48927
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 84
Length of database: 11,106,569
Length adjustment: 55
Effective length of query: 29
Effective length of database: 9,598,689
Effective search space: 278361981
Effective search space used: 278361981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)