BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0569500 Os07g0569500|AK106380
(266 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G49560.1 | chr5:20110961-20111785 REVERSE LENGTH=275 135 2e-32
AT3G50850.1 | chr3:18901389-18902144 REVERSE LENGTH=252 107 9e-24
>AT5G49560.1 | chr5:20110961-20111785 REVERSE LENGTH=275
Length = 274
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 117/227 (51%), Gaps = 16/227 (7%)
Query: 45 QLHHFHLPALPSPITVRTLPSLGLTFQLWPSASXXXXXXXXX--------XXXXXXXXXX 96
+L +++ ++ S + +R L S GL+FQLWP+AS
Sbjct: 44 ELQKYNISSIESTVVIRELTSQGLSFQLWPAASTFVTLLDNYRRDPSKSPLTATLLSLKK 103
Query: 97 ESPLGIXXXXXXXXXXXXXXXXXXXXXXXXSDLPAALPNLRHNASLNAPLLDARGGSVSV 156
SPL I +DLP L NL NA NA +++ GG V+V
Sbjct: 104 PSPLNILELGSGTGLVGIAAAITLSANVTVTDLPHVLDNLNFNAEANAEIVERFGGKVNV 163
Query: 157 VPLPWGDXXXXXXXXXXXXXSRFDLVVASDVVYYEALVDPLIETMRFF-VKGE-VVFVMA 214
PL WG+ DL++ASDVVY++ L +PL++T+R ++G+ ++F+MA
Sbjct: 164 APLRWGEADDVEVLG-----QNVDLILASDVVYHDHLYEPLLKTLRLMQLEGKRLIFLMA 218
Query: 215 HMRRWKRTDKKFFAKARKLFDVEVVHEDPPLEGWRHGPVVYLFTEKK 261
H+RRWK+ + FF KARKLFDV+V+H D P E R G VVY FT K+
Sbjct: 219 HLRRWKK-ESVFFKKARKLFDVDVIHSDVPQESSRIGVVVYRFTTKQ 264
>AT3G50850.1 | chr3:18901389-18902144 REVERSE LENGTH=252
Length = 251
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 43 DAQLHHFHLPALPSPITVRTLPSLGLTFQLWPSASXXXXX-------------XXXXXXX 89
+++L + + ++ S + +R LP+ G+ F+LW A+
Sbjct: 20 ESELQKYRINSIESTVVIRQLPTQGIAFKLWIPATTLVTLLDNYRRDPNISPLNRTFSSF 79
Query: 90 XXXXXXXESPLGIXXXXXXXXXXXXXXXXXXXXXXXXSDLPAALPNLRHNASLNAPLLDA 149
SP+ I +DLP + NL+ NA NA ++
Sbjct: 80 QSDGSDSSSPINIVELGSGTGIVGIAAAATLGANVTVTDLPNVIENLKFNADANAQVVAK 139
Query: 150 RGGSVSVVPLPWGDXXXXXXXXXXXXXSRFDLVVASDVVYYEALVDPLIETMRFFV---K 206
GG V V L WG+ DL++ASDVVY+ L +PL++T+RF +
Sbjct: 140 FGGKVHVASLRWGEIDDVESLG-----QNVDLILASDVVYHVHLYEPLLKTLRFLLLEGS 194
Query: 207 GEVVFVMAHMRRWKRTDKKFFAKARKLFDVEVVHEDPPLEGWRHGPVVYLFTEKKRR 263
E VF+MAH++RWK+ + FF KAR+ FDV+V+H D P EG R G VVY F K +
Sbjct: 195 SERVFLMAHLKRWKK-ESIFFKKARRFFDVDVIHCDDPQEGARIGVVVYRFAPKNQN 250
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,800,378
Number of extensions: 117095
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 3
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)