BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0561800 Os07g0561800|AK111334
(86 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G79360.1 | chr1:29854140-29855723 REVERSE LENGTH=528 95 7e-21
AT1G16390.1 | chr1:5602921-5604477 FORWARD LENGTH=519 87 2e-18
AT1G79410.1 | chr1:29868037-29869584 REVERSE LENGTH=516 73 3e-14
AT1G16370.1 | chr1:5596762-5598327 FORWARD LENGTH=522 64 1e-11
AT1G73220.1 | chr1:27538387-27540109 FORWARD LENGTH=540 62 9e-11
AT3G20660.1 | chr3:7225271-7228510 REVERSE LENGTH=527 48 8e-07
>AT1G79360.1 | chr1:29854140-29855723 REVERSE LENGTH=528
Length = 527
Score = 94.7 bits (234), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 1 VRNSAVGMVRQALVLGGVAAPMLVALGRERSFWSFGVFGLAVGCLGLFAVCLPETRGRSM 60
VRNSA+ M RQALVLGGV +P++VA GR+ +FWSFG+FGLA+G LGLFAV LPETRG +
Sbjct: 445 VRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGLFGLAIGLLGLFAVGLPETRGSDL 504
Query: 61 SDTM 64
DTM
Sbjct: 505 CDTM 508
>AT1G16390.1 | chr1:5602921-5604477 FORWARD LENGTH=519
Length = 518
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 49/64 (76%)
Query: 1 VRNSAVGMVRQALVLGGVAAPMLVALGRERSFWSFGVFGLAVGCLGLFAVCLPETRGRSM 60
VRNSA+ MVRQALV GGV +P++VA GRE FWS+G+FGL +G GLF LPETRG +
Sbjct: 440 VRNSAISMVRQALVFGGVFSPVMVAAGRENQFWSYGLFGLIIGLCGLFVFGLPETRGSVL 499
Query: 61 SDTM 64
DTM
Sbjct: 500 CDTM 503
>AT1G79410.1 | chr1:29868037-29869584 REVERSE LENGTH=516
Length = 515
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%)
Query: 1 VRNSAVGMVRQALVLGGVAAPMLVALGRERSFWSFGVFGLAVGCLGLFAVCLPETRGRSM 60
VRNSA M+RQALV+GG P++ +LGR SF VFG A+ LGLFA+ LPET+G S+
Sbjct: 436 VRNSATMMLRQALVVGGACCPLIASLGRNVPSLSFAVFGFAMSGLGLFALLLPETKGLSL 495
Query: 61 SDTM 64
DTM
Sbjct: 496 CDTM 499
>AT1G16370.1 | chr1:5596762-5598327 FORWARD LENGTH=522
Length = 521
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 1 VRNSAVGMVRQALVLGGVAAPMLVALGRERSFWSFGVFGLAVGCLGLFAVCLPETRGRSM 60
VR+SA M RQALV+GG P++ ++GR SF +FG+A+ LG+F + LPET+G S+
Sbjct: 442 VRSSATMMFRQALVVGGACCPLIASIGRYIPSVSFAIFGIAMSGLGMFVLILPETKGLSL 501
Query: 61 SDTM 64
D+M
Sbjct: 502 CDSM 505
>AT1G73220.1 | chr1:27538387-27540109 FORWARD LENGTH=540
Length = 539
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 1 VRNSAVGMVRQALVLGGVAAPMLVALGRERSFWSFGVFGLAVGCLGLFAVCLPETRGRSM 60
VRN+AV ++RQA +LG AAP+LVALGRE + SF VFG+A G+ ++ L ETR +
Sbjct: 459 VRNTAVSLLRQAFMLGASAAPLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPL 518
Query: 61 SDTM 64
+T+
Sbjct: 519 YETL 522
>AT3G20660.1 | chr3:7225271-7228510 REVERSE LENGTH=527
Length = 526
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 VRNSAVGMVRQALVLGGVAAPMLVALGRERSFWSFGVFGLAVGCLGLFAVCLPETRGRSM 60
VRN+A+G QA +G + AP +V LG E F F V GL G L + LPET + +
Sbjct: 447 VRNAALGCATQAAQMGAILAPFVVVLGEELPFGVFAVCGLVGGGLAFY---LPETLNKPL 503
Query: 61 SDTM 64
DTM
Sbjct: 504 YDTM 507
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,390,338
Number of extensions: 38490
Number of successful extensions: 95
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 6
Length of query: 86
Length of database: 11,106,569
Length adjustment: 57
Effective length of query: 29
Effective length of database: 9,543,857
Effective search space: 276771853
Effective search space used: 276771853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)