BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0558500 Os07g0558500|AK064914
         (287 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20890.1  | chr2:8987783-8989185 FORWARD LENGTH=301            333   8e-92

>AT2G20890.1 | chr2:8987783-8989185 FORWARD LENGTH=301
          Length = 300

 Score =  333 bits (853), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 162/226 (71%), Positives = 185/226 (81%), Gaps = 1/226 (0%)

Query: 55  GDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVY 114
            DVPP V+ETK  FLK+YKRPI SIY+TVLQEL+VQQHLMRYK TY+YD VFALGFVTVY
Sbjct: 62  ADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVY 120

Query: 115 DQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEI 174
           DQLMEGYPS++DRDAIFKAYI ALNEDP+QYR DAQKMEEWARSQ   SLV+FSSK+G+I
Sbjct: 121 DQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDI 180

Query: 175 EAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDL 234
           EA+LKDI+ RA  K  FSYSRFFAVGLFRLLELA+AT+PT+LDKLCA+LNINK+SVDRDL
Sbjct: 181 EAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDL 240

Query: 235 DVYRNILSKLVQAXXXXXXXXXXXXXXXXXXXXTPKSNEAVTKFDG 280
           DVYRN+LSKLVQA                    + K+NE ++K  G
Sbjct: 241 DVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLG 286



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,667,534
Number of extensions: 160333
Number of successful extensions: 476
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 189
Effective length of database: 8,419,801
Effective search space: 1591342389
Effective search space used: 1591342389
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)