BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0520900 Os07g0520900|AK120277
         (185 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61850.1  | chr1:22856317-22862225 FORWARD LENGTH=1312         290   3e-79

>AT1G61850.1 | chr1:22856317-22862225 FORWARD LENGTH=1312
          Length = 1311

 Score =  290 bits (742), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/182 (78%), Positives = 164/182 (90%), Gaps = 1/182 (0%)

Query: 1   VQRLSLFAVGNLAFCLETRRTLMHSESLRDLLIRLTLSQEKRVSKAAARALAILGENENL 60
           VQR +L AVGNLAFCLE RR L+ SESLR+LL+RL ++ E RV+KAAARALAILGENE L
Sbjct: 426 VQRQALLAVGNLAFCLENRRILITSESLRELLMRLIVTPEPRVNKAAARALAILGENEIL 485

Query: 61  RRAIRGRPVAKKGLRILSMDGGGMKGLATVQILKQIEQGTGKRIHEMFDLICGTSTGGML 120
           RR+I+GR V K+GLRIL+MDGGGMKGLATVQILK+IE+G+GK IHE+FDLICGTSTGGML
Sbjct: 486 RRSIKGRQVPKQGLRILTMDGGGMKGLATVQILKEIEKGSGKPIHELFDLICGTSTGGML 545

Query: 121 AMALGVKQMTLDQCEEIYTKLGKLVFAEPAPKD-EAATWKEKIDQLFKSSSQSFRVVVHG 179
           A+ALGVK MTL+QCEEIY  LGKLVFAE  PKD EAA+W+EK+DQL+KSSSQSFRVV+HG
Sbjct: 546 AIALGVKLMTLEQCEEIYKNLGKLVFAESVPKDNEAASWREKLDQLYKSSSQSFRVVIHG 605

Query: 180 SK 181
           SK
Sbjct: 606 SK 607



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,523,543
Number of extensions: 130481
Number of successful extensions: 402
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)