BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0517300 Os07g0517300|AK121812
(633 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16730.1 | chr3:5695633-5698863 REVERSE LENGTH=684 189 6e-48
>AT3G16730.1 | chr3:5695633-5698863 REVERSE LENGTH=684
Length = 683
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 196/370 (52%), Gaps = 40/370 (10%)
Query: 280 PWRPLNPHEPGNLKIRTCRKVKSFARQVIGAPKRNIIASLFPMEKMDG-------ASFKV 332
PW+PLNP+EPG LK++ +KVK +++ + ++ + S+FP+ + +G +K+
Sbjct: 303 PWKPLNPYEPGKLKVKPFKKVK-ILKKIGWSITKDHMTSMFPLARPNGPISSELIEIWKM 361
Query: 333 HLSQQETHHVPEPPPLYEKLMRSLEHGEPE-----SHLFGDLKDGHEP-------DIGVN 380
H + + P YEKL L +G + + + KD H+ D G +
Sbjct: 362 HGCASKDEQASQDIPYYEKLREMLVNGGNQPCGANGNYNDNDKDNHDEANNGDFHDFGEH 421
Query: 381 DFDIHEXXXXXXXXXXXXXXXIPTYPDKNNDATLDGAQGTQDSMDAHESLEDLCRSHLDA 440
D D E + N D +G Q ESLEDLCRSHLDA
Sbjct: 422 DGDDAEHPFMDEDVLNMNDGGAAEF--HNYDGFENGESNCQ------ESLEDLCRSHLDA 473
Query: 441 LLASIAEAEQQTELDARVSTWKERIEHALEEQDRNPPFDIGSYGEQIIDTLSSRTENAGI 500
LLA+IA++E+QT+L ARVSTWK++IE LEEQ+ +PPFDI YG++II+ L+ E+ +
Sbjct: 474 LLANIAKSEKQTDLAARVSTWKQKIEQNLEEQELHPPFDIQEYGDRIINKLTVE-ESGNV 532
Query: 501 ASFSEIVSGKPKYEVARTFSALLQLVNGRSVDLDK-GQTTNGLVCHTASNPFHVRLIGPN 559
+F++++ + K+EVAR FSALLQLVN VDL+K G +TN +C+TA PF VRL+ +
Sbjct: 533 ETFTDLMKDQEKHEVARAFSALLQLVNNGDVDLEKPGNSTNEPMCYTAVKPFSVRLLKVH 592
Query: 560 QRPEIEAR---FARKRVNSPSRNKGSGXXXXXXXXXXXXHGHKNGKVPVKTS------IK 610
R E R +KR SP S + KV +K S ++
Sbjct: 593 NRKN-EKRGIHLPQKRAKSPITKGKSHESPPPKKRNTCSVSSQTRKVSLKISKINGVGVR 651
Query: 611 LTPDGKRRRR 620
TP+ K+RR+
Sbjct: 652 CTPNSKKRRK 661
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 1 EYLLRICSGEISG--EDGAHSVNFAEAALLLQGSVQVYSRKVEYLYTLVLNALEFLSQKK 58
EYLL+ICSGEI+G EDG VNFAEAALLLQGSVQVYS+KVEYLY LVL LEFLS K+
Sbjct: 37 EYLLKICSGEITGNEEDGQIPVNFAEAALLLQGSVQVYSKKVEYLYNLVLRTLEFLS-KQ 95
Query: 59 QDQENSSAQANESDRST---VPNEEDDVFSGLDDVPVEARTTLDNNIDRDDLLKKNVRPP 115
+DQE S +NE++ S+ V EE+D+F +DD+PV+ + LD+++ D + V+PP
Sbjct: 96 RDQEQSKGTSNENEASSSRQVDEEENDLFWNVDDIPVDTKNRLDSSVGGDTCPSQFVKPP 155
Query: 116 ANLLVFEGDCMDXXXXXXXXXXX--XTCGFFGDFLLLDPCDAPAVSDFL 162
ANL+V EGDC+D T + DF+LLDPCDA AV++FL
Sbjct: 156 ANLVVLEGDCLDTSGDGGELESYLLATTHLYRDFILLDPCDAVAVNEFL 204
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,789,395
Number of extensions: 512896
Number of successful extensions: 1227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 2
Length of query: 633
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 528
Effective length of database: 8,227,889
Effective search space: 4344325392
Effective search space used: 4344325392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)