BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0517100 Os07g0517100|AK071773
(173 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G21870.1 | chr4:11603756-11604285 REVERSE LENGTH=135 89 8e-19
AT1G59860.1 | chr1:22031474-22031941 FORWARD LENGTH=156 77 6e-15
AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158 73 6e-14
AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158 69 1e-12
AT4G10250.1 | chr4:6370537-6371124 FORWARD LENGTH=196 54 4e-08
AT5G37670.1 | chr5:14969035-14969448 FORWARD LENGTH=138 50 5e-07
AT5G12020.1 | chr5:3882409-3882876 REVERSE LENGTH=156 49 1e-06
AT5G12030.1 | chr5:3884214-3884684 REVERSE LENGTH=157 49 2e-06
AT2G29500.1 | chr2:12633279-12633740 REVERSE LENGTH=154 48 2e-06
AT3G46230.1 | chr3:16984263-16984733 REVERSE LENGTH=157 47 7e-06
>AT4G21870.1 | chr4:11603756-11604285 REVERSE LENGTH=135
Length = 134
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 55 SHVSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTELXXXXXXXXXXXXXRRSFA 114
+HV W ++ +H +S LPG+RKEEI+VE+ED++YL+IRTE ++F
Sbjct: 26 NHVRWSQSPDSHTFSVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSPPDQPL----KTFK 81
Query: 115 RKFRLPAMVDADGISAEYTHGVLRVTVP-RLHTR 147
RKFRLP +D GISA Y GVL V VP R+ TR
Sbjct: 82 RKFRLPESIDMIGISAGYEDGVLTVIVPKRIMTR 115
>AT1G59860.1 | chr1:22031474-22031941 FORWARD LENGTH=156
Length = 155
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 57 VSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTE--LXXXXXXXXXXXXXRRS-- 112
V W+ETA AH++ A LPG++KEE++VE+ED L I E + R S
Sbjct: 48 VDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGG 107
Query: 113 FARKFRLPAMVDADGISAEYTHGVLRVTVPRLHTRAR 149
F+RKFRLP V D + A +GVL VTVP++ T +
Sbjct: 108 FSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKK 144
>AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158
Length = 157
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 57 VSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTE--LXXXXXXXXXXXXXRRS-- 112
V W+ETA AH++ A LPG++KEE++VE+ED L I E + R S
Sbjct: 50 VDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQ 109
Query: 113 FARKFRLPAMVDADGISAEYTHGVLRVTVPRLH 145
F+RKF+LP V D + A +GVL VTVP++
Sbjct: 110 FSRKFKLPENVKMDQVKASMENGVLTVTVPKVE 142
>AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158
Length = 157
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 55 SHVSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTELXXXXXXXXXX----XXXR 110
+ V W ET AH++ A LPG+RKEE++VEVED L I E
Sbjct: 50 AKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSS 109
Query: 111 RSFARKFRLPAMVDADGISAEYTHGVLRVTVPRLHTR 147
F R+FRLP + I A +GVL VTVP++ +
Sbjct: 110 GKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEK 146
>AT4G10250.1 | chr4:6370537-6371124 FORWARD LENGTH=196
Length = 195
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 55 SHVSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTELXXXXXXXXXX-XXXRRSF 113
+ V W+ETA H +PG++K+E+++EVE+ L + E RS+
Sbjct: 71 ARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSY 130
Query: 114 A---RKFRLPAMVDADGISAEYTHGVLRVTVPRL---HTRARPVVNLA 155
R+F+LP VD + + A+ +GVL + + +L + VVN+A
Sbjct: 131 GKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIA 178
>AT5G37670.1 | chr5:14969035-14969448 FORWARD LENGTH=138
Length = 137
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 57 VSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTE---------LXXXXXXXXXXX 107
+ W E+ +H++ ++PG KE+I+V++E+ L IR E L
Sbjct: 24 IDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFS 83
Query: 108 XXRRSFARKFRLPAMVDADGISAEYTHGVLRVTVPR 143
F R+ LP V D + A +GVL V VP+
Sbjct: 84 GGGSEFLRRIELPENVKVDQVKAYVENGVLTVVVPK 119
>AT5G12020.1 | chr5:3882409-3882876 REVERSE LENGTH=156
Length = 155
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 61 ETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTELXXXXXXXXXXXXXRR-----SFAR 115
E A+ + +PG++ +EI+V+VE+ LV+ E R F R
Sbjct: 51 EHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMR 110
Query: 116 KFRLPAMVDADGISAEYTHGVLRVTV 141
KF+LP D D ISA GVL+VTV
Sbjct: 111 KFQLPENADLDKISAVCHDGVLKVTV 136
>AT5G12030.1 | chr5:3884214-3884684 REVERSE LENGTH=157
Length = 156
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 65 AHLYSASLPGVRKEEIRVEVEDAMYLVI---RTELXXXXXXXXXXXXXRR--SFARKFRL 119
A++++ +PG++ +EI+V++E+ LV+ R RR F RKF+L
Sbjct: 56 AYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQL 115
Query: 120 PAMVDADGISAEYTHGVLRVTV 141
P D + ISA GVL+VT+
Sbjct: 116 PDNADLEKISAACNDGVLKVTI 137
>AT2G29500.1 | chr2:12633279-12633740 REVERSE LENGTH=154
Length = 153
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 57 VSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTE--LXXXXXXXXXXXXXRRS-- 112
V W ET AH++ A LPG++KEE++VE+E+ L I E + R S
Sbjct: 48 VDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQ 107
Query: 113 FARKFRLPAMVDADGISAEYTHGVLRVTVPRLHTRARPVVNL 154
F R+FRLP V D + A +GVL VTVP+ T+ V ++
Sbjct: 108 FTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSI 149
>AT3G46230.1 | chr3:16984263-16984733 REVERSE LENGTH=157
Length = 156
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 55 SHVSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTELXXXXXXXXXX----XXXR 110
+ V W ET AH++ A +PG++KEE++VEVED L I E
Sbjct: 49 AKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSS 108
Query: 111 RSFARKFRLPAMVDADGISAEYTHGVLRVTVPRLHTRARPVV 152
F R+FRLP + + A +GVL VTVP++ ++P V
Sbjct: 109 GKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQ-ESKPEV 149
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.134 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,375,833
Number of extensions: 59186
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 11
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)