BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0514400 Os07g0514400|Os07g0514400
(895 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47890.1 | chr3:17667172-17673530 REVERSE LENGTH=1569 83 6e-16
AT3G47910.2 | chr3:17674737-17681444 REVERSE LENGTH=1608 81 3e-15
AT1G65130.1 | chr1:24196472-24201022 REVERSE LENGTH=1080 58 3e-08
AT1G65120.2 | chr1:24191457-24195907 REVERSE LENGTH=1148 54 3e-07
AT1G52450.1 | chr1:19541684-19546266 REVERSE LENGTH=1137 54 3e-07
>AT3G47890.1 | chr3:17667172-17673530 REVERSE LENGTH=1569
Length = 1568
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 117/279 (41%), Gaps = 49/279 (17%)
Query: 613 LDAILRSLWHIRRFCGDLWEIPCISPDVKARVYRAILLRIFRSWDQCKTCDLPSSAIFMV 672
L+ I++SLW++ F +A R+ L D C C L AIF
Sbjct: 1248 LNVIIQSLWNLGMF--------------RAEFLRSSTLEHHHFGDPCVVCSL--YAIFTA 1291
Query: 673 DSLRSFVIDEKAGNISAYRVVESIL----------------ERLHVAQTPLHFEFKGESL 716
S S ++ S+ R+ S L E L V LH F S
Sbjct: 1292 LSTASSETRKEPVAPSSLRIALSNLYPDSSFFQEAQMNDASEVLAVIFDCLHRSFAQSSS 1351
Query: 717 VPQTAIVPS-------LLGCICLAHNLFGLHIIEK-KC-NCVNEVPMKTKSTFFHSINLG 767
V T S C+AH+LFG+ + E+ C +C E ++FFH+IN
Sbjct: 1352 VSDTESAESNSTGSWDCANRSCIAHSLFGMDVSEQLNCYSCGLESRHLKYTSFFHNINAS 1411
Query: 768 SVEGTTL----ESFSELLKAV--DKQSVCDFRNGGCGHR--ITRYLWYPPHFFMIVLRWP 819
++ + SF ELL V + Q CD GGCG R I L PPH F IVL W
Sbjct: 1412 ALRTMKVTCAENSFDELLNLVEMNHQLACDREAGGCGKRNHIHHILTTPPHVFTIVLGWQ 1471
Query: 820 DNKGNHINMHKVLISLAAELDISHIYEGLQSESMYTLVS 858
+ ++ L +L E+DIS +Y G+ ++ Y+LVS
Sbjct: 1472 NTCETVEDIAATLAALNTEIDISIMYRGVDPKNTYSLVS 1510
>AT3G47910.2 | chr3:17674737-17681444 REVERSE LENGTH=1608
Length = 1607
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 10/139 (7%)
Query: 730 ICLAHNLFGLHIIEK-KC-NCVNEVPMKTKSTFFHSINLGSVEGTTL----ESFSELLKA 783
C+AH+LFG+ I E+ C +C E ++FFH+IN ++ + SF ELL
Sbjct: 1412 TCIAHSLFGMDIFEQLNCYSCGLESRHLKYTSFFHNINASALRTMKVTCAENSFDELLNL 1471
Query: 784 V--DKQSVCDFRNGGCG--HRITRYLWYPPHFFMIVLRWPDNKGNHINMHKVLISLAAEL 839
V + Q CD GGCG + I L PPH F VL W + ++ L +L E+
Sbjct: 1472 VEMNHQLACDPETGGCGKLNHIHHILTTPPHVFTTVLGWQNTCETVEDIAATLAALNTEI 1531
Query: 840 DISHIYEGLQSESMYTLVS 858
DIS +Y GL +S Y+LVS
Sbjct: 1532 DISIMYRGLDPKSTYSLVS 1550
>AT1G65130.1 | chr1:24196472-24201022 REVERSE LENGTH=1080
Length = 1079
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 35/142 (24%)
Query: 777 FSELLKAV--DKQSVCDFRNGGCGHR--ITRYLWYPPHFFMIVLRWPDNKGNHINMHKVL 832
F + LK + + + +CD GGCG R + + P F IVL W N+ I +++
Sbjct: 936 FEDTLKVIRMNNEMICDVGTGGCGERNLVHHTISRCPPIFTIVLEWEKNE-TEIEIYETT 994
Query: 833 ISLAAELDISHIYEGLQSESMYTLVS--------------------------AQAE---- 862
+L E+DIS +YEGL+ + Y LVS A AE
Sbjct: 995 NALHWEIDISRLYEGLEPNTNYRLVSMIGCVEEGEYICMAYEKNRWVSRRHEASAEEVVG 1054
Query: 863 SWKGLIDRYSQANLRPEILFFE 884
+WK ++ + +R E+LF+E
Sbjct: 1055 NWKSVVKICGERKIRSEVLFYE 1076
>AT1G65120.2 | chr1:24191457-24195907 REVERSE LENGTH=1148
Length = 1147
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 36/147 (24%)
Query: 777 FSELLKAV--DKQSVCDFRNGGCGHR--ITRYLWYPPHFFMIVLRWPDNKGNHINMHKVL 832
F E+L + + + +CD + GGCG + L P F IVL W N+ + +
Sbjct: 1002 FEEILTVIRMEDEMICDVKTGGCGKTNFVHHVLSRCPPIFTIVLEWEKNE-TETEISETA 1060
Query: 833 ISLAAELDISHIYEGLQS-ESMYTLVSA-----QAE------------------------ 862
+LA E+DIS +YEGL+ + Y LVS + E
Sbjct: 1061 KALAWEIDISRLYEGLEEPNTNYRLVSMIGCGEEGEHICMAYKTNRWVSLRHEALLEEGV 1120
Query: 863 -SWKGLIDRYSQANLRPEILFFEHGRK 888
+WK ++ + +RPEILF+E K
Sbjct: 1121 GNWKNVVRICGERRVRPEILFYEAAYK 1147
>AT1G52450.1 | chr1:19541684-19546266 REVERSE LENGTH=1137
Length = 1136
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 123/289 (42%), Gaps = 49/289 (16%)
Query: 588 AKLVNDPLEDALLAHPQNC-----HKPQVPLDAILRSLWHIRRFCGDLWEIPCISPDVKA 642
A++++ P ED+L AH ++ + LD L++L +I+ + D+K
Sbjct: 790 AEMLDMPKEDSLSAHSESAIGGAAARYNSALDMTLKALLNIK----------VLKEDLKN 839
Query: 643 RVYR-----AILLRIFRSW--DQCKTCDLPSSAIFMVDSLRSFVIDEKAGNISAYRVVES 695
R + L F ++ + KT + S + + S VI + + A +VV +
Sbjct: 840 NTQRFQQVPSALQHFFNAFVSESIKTEGVYSCILSDLLSSLEEVISKSS---DAAKVVVA 896
Query: 696 ILERLHVAQTPLHFEFKGESLVPQTAIVPSLLGCICLAHNLFGLHIIEKKCNCVNEVPMK 755
ILE + P +GESLV + LA N + +KC + P K
Sbjct: 897 ILEFWFCWKNP-----EGESLVTR---------LFTLAENE---RMSCRKCRWITNYPEK 939
Query: 756 TKSTFFHSINLGSVEGTTLES--FSELLKAV--DKQSVCDFRNGGCGHR--ITRYLWYPP 809
+ T + ES F ++LK + + Q CD + GGCG + ++ P
Sbjct: 940 SSYTIVMPADSIRQLKCAFESMKFVDILKVIRMEYQKSCDIKTGGCGESNFVHHFISRCP 999
Query: 810 HFFMIVLRWPDNKGNHINMHKVLISLAAELDISHIYEGLQSESMYTLVS 858
F IVL W ++ + + +L ELDIS +Y GL+ + Y LVS
Sbjct: 1000 PVFTIVLEWEKSETEK-EISETTKALDLELDISRLYVGLEPNTNYRLVS 1047
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,503,741
Number of extensions: 814801
Number of successful extensions: 1925
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1931
Number of HSP's successfully gapped: 5
Length of query: 895
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 788
Effective length of database: 8,173,057
Effective search space: 6440368916
Effective search space used: 6440368916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)