BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0512000 Os07g0512000|AK108133
(137 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07630.1 | chr3:2435457-2437530 FORWARD LENGTH=382 75 1e-14
AT1G11790.1 | chr1:3981476-3984962 FORWARD LENGTH=393 75 1e-14
AT1G08250.1 | chr1:2588994-2590235 REVERSE LENGTH=414 62 7e-11
AT3G44720.1 | chr3:16271759-16273033 FORWARD LENGTH=425 60 4e-10
AT5G22630.1 | chr5:7524645-7525922 FORWARD LENGTH=426 59 7e-10
AT2G27820.1 | chr2:11856808-11858082 FORWARD LENGTH=425 58 2e-09
>AT3G07630.1 | chr3:2435457-2437530 FORWARD LENGTH=382
Length = 381
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 49 IYQTSIVFGLEEGPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKY 100
+++TSIVF LEEGPG+LFKAL+ F +R INL+KIESRP ++ P+R G KY
Sbjct: 285 LFKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRKHPLRASGGLKY 336
>AT1G11790.1 | chr1:3981476-3984962 FORWARD LENGTH=393
Length = 392
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 42/56 (75%), Gaps = 5/56 (8%)
Query: 50 YQTSIVFGLEEGPGILFKALSAFWMRDINLSKIESRPNKREPMRT-----QGNEKY 100
Y+TSIVF LEEGPG+LFKAL+ F +R INLSKIESRP +R P+R G+ KY
Sbjct: 293 YKTSIVFSLEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNGSAKY 348
>AT1G08250.1 | chr1:2588994-2590235 REVERSE LENGTH=414
Length = 413
Score = 62.4 bits (150), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 50 YQTSIVFGLEEGPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKYATLLLHFQH 109
++TSIVF E+G +LFK LSAF RDI+L+KIESRPN P+R + T HF++
Sbjct: 305 FKTSIVFAHEKGTSVLFKVLSAFAFRDISLTKIESRPNHNRPIRVVDDANVGT-AKHFEY 363
>AT3G44720.1 | chr3:16271759-16273033 FORWARD LENGTH=425
Length = 424
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 50 YQTSIVFGLEE--GPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKYAT 102
++TSIVF +E G +LFK LSAF RDI+L+KIESRP+ P+R G+ + T
Sbjct: 314 FKTSIVFAAQEHKGTSVLFKVLSAFAFRDISLTKIESRPHHNRPLRVVGDGSFGT 368
>AT5G22630.1 | chr5:7524645-7525922 FORWARD LENGTH=426
Length = 425
Score = 58.9 bits (141), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 50 YQTSIVFGLEE--GPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKYATLLLHF 107
++TSIVF +E G +LFK LSAF R+I+L+KIESRP++ P+R G+E T HF
Sbjct: 315 FKTSIVFAAQEHKGTSVLFKVLSAFAFRNISLTKIESRPHQNCPVRVVGDENVGT-SKHF 373
Query: 108 QHS 110
+++
Sbjct: 374 EYT 376
>AT2G27820.1 | chr2:11856808-11858082 FORWARD LENGTH=425
Length = 424
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 50 YQTSIVFGLEEGPGILFKALSAFWMRDINLSKIESRPNKREPMR 93
++TSIVF E+G +LFK LSAF R+I+L+KIESRPN P+R
Sbjct: 310 FKTSIVFAHEKGTCVLFKVLSAFAFRNISLTKIESRPNHNVPIR 353
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,895,027
Number of extensions: 103395
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 6
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)