BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0507200 Os07g0507200|AK102722
(177 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03780.3 | chr1:947555-951696 REVERSE LENGTH=791 160 5e-40
AT5G44270.1 | chr5:17833636-17835740 FORWARD LENGTH=310 103 7e-23
AT3G01015.1 | chr3:1798-4017 REVERSE LENGTH=489 81 2e-16
AT5G15510.2 | chr5:5034120-5036588 FORWARD LENGTH=520 73 1e-13
AT5G37478.1 | chr5:14881560-14883799 FORWARD LENGTH=179 67 6e-12
>AT1G03780.3 | chr1:947555-951696 REVERSE LENGTH=791
Length = 790
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 108/162 (66%)
Query: 16 CTRPEGFQLESLVXXXXXXXXXXXXXXXXXXXXXXXXVVKAHPIMKEDPIPLPEKERKPL 75
CT+PE FQLESLV + KA P++KEDPIP+PEK R PL
Sbjct: 582 CTQPEPFQLESLVRHEEEMRREREERRRMETEEAQKRLFKAQPVIKEDPIPVPEKVRMPL 641
Query: 76 TEVQPLKLHVDERAVQRSEFDNMVKEKEITYKRLREENEFAQKIEEEKALKQLRRTLVPQ 135
TE+Q LHV+ RAV+R++FD+ +KEKE YKR REE+E A+ +EEE+ALKQ+R+T+VP
Sbjct: 642 TEIQEFNLHVEHRAVERADFDHKIKEKENQYKRYREESEAAKMVEEERALKQMRKTMVPH 701
Query: 136 ARPLPKFDRPFRPQRSTKQVTRPKSPQLQVDQRGARRHAFIR 177
ARP+P F++PF PQ+S K T+ KSP L+V +R RR R
Sbjct: 702 ARPVPNFNKPFLPQKSNKGTTKAKSPNLRVIKRTERRTMMAR 743
>AT5G44270.1 | chr5:17833636-17835740 FORWARD LENGTH=310
Length = 309
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 69/94 (73%)
Query: 79 QPLKLHVDERAVQRSEFDNMVKEKEITYKRLREENEFAQKIEEEKALKQLRRTLVPQARP 138
Q LHVD R ++R++FD+ +KEKE+ YKR EE E A+ +EEE+ALKQLRRT+VPQ RP
Sbjct: 206 QEFNLHVDHRPIERADFDHKIKEKEMMYKRHLEEAEAAKMVEEERALKQLRRTIVPQTRP 265
Query: 139 LPKFDRPFRPQRSTKQVTRPKSPQLQVDQRGARR 172
+ + PF P +S K+ T+P SP+L+V +R RR
Sbjct: 266 VSNLNNPFLPHKSNKETTKPNSPKLRVIRRIDRR 299
>AT3G01015.1 | chr3:1798-4017 REVERSE LENGTH=489
Length = 488
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 71/115 (61%)
Query: 53 VVKAHPIMKEDPIPLPEKERKPLTEVQPLKLHVDERAVQRSEFDNMVKEKEITYKRLREE 112
+ + P ++P L + K +T LKLH D RAV+R+EFD V EK ++ + E
Sbjct: 346 IAQGLPWTTDEPENLVKPHVKDITIPVDLKLHSDIRAVERAEFDYQVTEKINLVEQYKTE 405
Query: 113 NEFAQKIEEEKALKQLRRTLVPQARPLPKFDRPFRPQRSTKQVTRPKSPQLQVDQ 167
E QK+ EE+ +++LR+ LVP+A+P+P FDRPF P+RS K T P+ P+ + Q
Sbjct: 406 RERQQKLAEEEEIRRLRKELVPKAQPMPYFDRPFIPKRSNKHPTVPRDPKFNIPQ 460
>AT5G15510.2 | chr5:5034120-5036588 FORWARD LENGTH=520
Length = 519
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%)
Query: 53 VVKAHPIMKEDPIPLPEKERKPLTEVQPLKLHVDERAVQRSEFDNMVKEKEITYKRLREE 112
+ + P ++P L + K +T L LH D RAV+R+EFD V EK ++ + E
Sbjct: 356 IAQGLPWTTDEPECLVKPHWKDITRPVDLTLHSDVRAVERAEFDYQVAEKMSFIEQYKME 415
Query: 113 NEFAQKIEEEKALKQLRRTLVPQARPLPKFDRPFRPQRSTKQVT 156
E QK+ EE+ +++LR+ LVP+A+P+P FDRPF P+R T +V
Sbjct: 416 RERQQKLAEEEEIRRLRKELVPKAQPMPYFDRPFIPRRPTNRVN 459
>AT5G37478.1 | chr5:14881560-14883799 FORWARD LENGTH=179
Length = 178
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 68 PEKE-RKPLTEVQPLKLHVDERAVQRSEFDNMVKEKEITYKRLREENEFAQKIEEEKALK 126
P KE +KPL KLH ERAV+R+ F+ V K +++ E QK+ EE+ ++
Sbjct: 60 PAKENKKPLE----FKLHSGERAVKRAMFNYSVATNYYIQKLQKKQEERLQKMIEEEEIR 115
Query: 127 QLRRTLVPQARPLPKFDRPFRPQRSTKQVTRPKSPQL 163
LR+ +VP+A+ +P FDRPF PQRS++ +T PK P
Sbjct: 116 MLRKEMVPKAQLMPFFDRPFLPQRSSRPLTMPKEPSF 152
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,085,741
Number of extensions: 121062
Number of successful extensions: 769
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 10
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)