BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0481200 Os07g0481200|AK061465
(138 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G49050.1 | chr3:18181498-18183613 FORWARD LENGTH=478 176 4e-45
AT4G00500.1 | chr4:225214-226978 REVERSE LENGTH=461 166 3e-42
AT5G37710.1 | chr5:14979159-14981400 FORWARD LENGTH=437 141 8e-35
AT2G42450.1 | chr2:17672425-17674854 REVERSE LENGTH=547 59 1e-09
AT4G16070.1 | chr4:9096808-9100596 REVERSE LENGTH=655 57 3e-09
AT3G14075.1 | chr3:4663819-4666338 REVERSE LENGTH=643 48 2e-06
>AT3G49050.1 | chr3:18181498-18183613 FORWARD LENGTH=478
Length = 477
Score = 176 bits (446), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 105/122 (86%), Gaps = 1/122 (0%)
Query: 1 NGLLKAAEWLFDAECDVLRDLLERNPGYTLTFAGHSLGSGVVAMLALVAVHNRDRLGGVE 60
NGL+K+A ++ D EC VL++L+++ P YTLTFAGHSLGSGV MLAL+ V + +RLG ++
Sbjct: 144 NGLVKSAGYVLDEECKVLKELVKKYPSYTLTFAGHSLGSGVATMLALLVVRHPERLGNID 203
Query: 61 RKRVRCFAMAPARCMSLNLAVRYADVINSVILQDDFLPRTDTPLEDVFKSLVWVPDVVLC 120
RKRVRCFA+APARCMSLNLAVRYADVINSVILQDDFLPRT TPLED+FKS+ +P +LC
Sbjct: 204 RKRVRCFAIAPARCMSLNLAVRYADVINSVILQDDFLPRTATPLEDIFKSVFCLP-CLLC 262
Query: 121 IQ 122
I+
Sbjct: 263 IR 264
>AT4G00500.1 | chr4:225214-226978 REVERSE LENGTH=461
Length = 460
Score = 166 bits (421), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 1 NGLLKAAEWLFDAECDVLRDLLERNPGYTLTFAGHSLGSGVVAMLALVAVHNRDRLGGVE 60
NGLLKAA W+F+ E VLR+LLE NP Y+LTF GHSLG+GVV++L L + NR RLG +E
Sbjct: 143 NGLLKAAMWVFEEEHVVLRELLEANPSYSLTFVGHSLGAGVVSLLVLFVIQNRVRLGNIE 202
Query: 61 RKRVRCFAMAPARCMSLNLAVRYADVINSVILQDDFLPRTDTPLEDVFKSLV 112
RKR+RCFA+AP RCMSL+LAV YADVINSV+LQDDFLPRT T LE+VFKS++
Sbjct: 203 RKRIRCFAIAPPRCMSLHLAVTYADVINSVVLQDDFLPRTTTALENVFKSII 254
>AT5G37710.1 | chr5:14979159-14981400 FORWARD LENGTH=437
Length = 436
Score = 141 bits (356), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 95/128 (74%), Gaps = 1/128 (0%)
Query: 2 GLLKAAEWLFDAECDVLRDLLERNP-GYTLTFAGHSLGSGVVAMLALVAVHNRDRLGGVE 60
GLLK+A W+ + E + L + E N Y L FAGHSLGSGV A++A++ V+ +G +
Sbjct: 142 GLLKSAAWVLNQESETLWRVWEENGREYDLVFAGHSLGSGVAALMAVLVVNTPAMIGDIP 201
Query: 61 RKRVRCFAMAPARCMSLNLAVRYADVINSVILQDDFLPRTDTPLEDVFKSLVWVPDVVLC 120
R +VRCFA+APARCMSLNLAV+YADVI+SVILQDDFLPRT TPLED+FKS+ +P ++
Sbjct: 202 RNKVRCFALAPARCMSLNLAVKYADVISSVILQDDFLPRTATPLEDIFKSVFCLPCLLFL 261
Query: 121 IQLAMPFM 128
+ L F+
Sbjct: 262 VCLRDTFI 269
>AT2G42450.1 | chr2:17672425-17674854 REVERSE LENGTH=547
Length = 546
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 2 GLLKAAEWLFDAECDVLRDLLERNPGYTLTFAGHSLGSGVVAMLALVAVHNRDRLGGVER 61
G +AA W + E +R L + GY L GHSLG + +++A++ G +
Sbjct: 277 GTAEAARWFLNHELQTIRRCLAKYEGYKLRLVGHSLGGAIASLMAIMLKKMPREELGFDA 336
Query: 62 KRVRCFAMAPARCMSLNLAVRYADVINSVILQDDFLPR 99
+ + A C+S LA ++ + ++++QDD +PR
Sbjct: 337 EIISAVGYATPPCVSKELAENCSEFVTTIVMQDDIIPR 374
>AT4G16070.1 | chr4:9096808-9100596 REVERSE LENGTH=655
Length = 654
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 2 GLLKAAEWLFDAECDVLRDLLERNPGYTLTFAGHSLGSGVVAMLALVAVHNRDRLGGVER 61
G++ AA W+ L L+ NP + + GHSLG G ++L + + E
Sbjct: 225 GMVAAARWIAKLSVPCLLKALDENPSFKVQIVGHSLGGGTASLLTYILREQK------EF 278
Query: 62 KRVRCFAMAPARCMSLNLAVRYADVINSVILQDDFLPRTDTPLEDVFKSLV 112
CF APA CM+ +LA I ++I D +P D +S V
Sbjct: 279 ASATCFTFAPAACMTWDLAESGKHFITTIINGSDLVPTFSASSVDDLRSEV 329
>AT3G14075.1 | chr3:4663819-4666338 REVERSE LENGTH=643
Length = 642
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 2 GLLKAAEWLFDAECDVLRDLLERNPGYTLTFAGHSLGSGVVAMLALVAVHNRDRLGGVER 61
G++ AA + L LE+ P Y + GHSLG G A+L + +
Sbjct: 227 GMVAAARCIAKLATPCLLKGLEQYPDYKIKIVGHSLGGGTAALLTYIMREQK------ML 280
Query: 62 KRVRCFAMAPARCMSLNLAVRYADVINSVILQDDFLPRTDTPLEDVFKSLV----WVPDV 117
C APA CM+ LA D I SVI D +P D ++ V W+ D+
Sbjct: 281 STATCVTFAPAACMTWELADSGNDFIVSVINGADLVPTFSAAAVDDLRAEVTASAWLNDL 340
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.141 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,009,455
Number of extensions: 107854
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 6
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 106 (45.4 bits)