BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0478700 Os07g0478700|Os07g0478700
         (1182 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48050.1  | chr5:19472661-19473770 REVERSE LENGTH=370          131   3e-30
AT1G34070.1  | chr1:12402283-12403209 FORWARD LENGTH=309          119   1e-26
ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               56   1e-07

>AT5G48050.1 | chr5:19472661-19473770 REVERSE LENGTH=370
          Length = 369

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 6/197 (3%)

Query: 160 ATANLHAQAISVLNIKSLVPVTLDVNSGTYTWWRGLLLVILSKYALADHVLTDNYRPDHP 219
            T + + ++  ++ I++ + VTLD+N   Y  WR L   +   + +  H+  D      P
Sbjct: 4   TTLSSYEKSFGIMQIRAYIFVTLDLNKLNYDVWRELFETLCLSFGVLGHI--DGSSTPTP 61

Query: 220 ----DWMRMDCVVLSWMYGTISTDLLESVMTHTTTARLVWRSLEHQFLGNREARALNLNA 275
                W   D +V  W+YGTI+  LL++++    TAR +W SLE+ F  N+EARAL    
Sbjct: 62  MTEKRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFEN 121

Query: 276 EFYNFQQGDLSVTDYCRRLKAMAADLADVGEPVGDRTLTLATIQGLDENFAHLQSAFTMR 335
           E       DLSV +YC++LK+++  L +V  P+ DR L +  + GL E + ++ +    +
Sbjct: 122 ELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHK 181

Query: 336 KPFPSFAEVRSQLLLDE 352
            PFPSF E RS LL++E
Sbjct: 182 SPFPSFTEARSMLLMEE 198



>AT1G34070.1 | chr1:12402283-12403209 FORWARD LENGTH=309
          Length = 308

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 6/202 (2%)

Query: 167 QAISVLNIKSLVPVTLDVNSGTYTWWRGLLLVILSKYALADHV----LTDNYRPDHPDWM 222
           Q   V NIKS +PV LD+    Y  WR L L     + +  H+    L  N   +  +W 
Sbjct: 9   QIYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTN--ANDVNWQ 66

Query: 223 RMDCVVLSWMYGTISTDLLESVMTHTTTARLVWRSLEHQFLGNREARALNLNAEFYNFQQ 282
           + D +V   +YGT++    +     ++T+R +W  +++QF  N++ARAL L++E      
Sbjct: 67  KRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDI 126

Query: 283 GDLSVTDYCRRLKAMAADLADVGEPVGDRTLTLATIQGLDENFAHLQSAFTMRKPFPSFA 342
           GD+ V DY R++K +A  L +V  PV DR L +  + GL+  F ++ +    R+PFPSF 
Sbjct: 127 GDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFD 186

Query: 343 EVRSQLLLDELTKNRSHTPATT 364
           +  + L  +E    R+  P  T
Sbjct: 187 DAATMLQEEEDRLKRAIKPNPT 208



>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 717 SVIPPYRELLAS--LPSSFWVEALHTATHLINRHPTKTLQFHTPFFALYGIHPTYNHLRV 774
           ++I   R +L    LP +F  +A +TA H+IN++P+  + FH P    +   PTY++LR 
Sbjct: 4   TIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRR 63

Query: 775 FGCKCY 780
           FGC  Y
Sbjct: 64  FGCVAY 69



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,868,284
Number of extensions: 707703
Number of successful extensions: 1653
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1652
Number of HSP's successfully gapped: 3
Length of query: 1182
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1072
Effective length of database: 8,090,809
Effective search space: 8673347248
Effective search space used: 8673347248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)