BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0462700 Os07g0462700|AK104968
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61200.1  | chr3:22657599-22658350 REVERSE LENGTH=189           79   2e-15
AT1G04290.1  | chr1:1147721-1148352 REVERSE LENGTH=156             52   1e-07

>AT3G61200.1 | chr3:22657599-22658350 REVERSE LENGTH=189
          Length = 188

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)

Query: 68  CTLTVSPAAVNGYNTLHXXXXXXXXXXXXXX-XXXXXXXDKEMFLGELSTAYLSAARLNS 126
           C++TV+P   N +  LH                      DK +F+GELS +YLS+A ++S
Sbjct: 83  CSVTVTPGISNFFKGLHGGAVASIAERVAMACVKTVVSEDKHLFIGELSMSYLSSAPISS 142

Query: 127 EVEVEAQILRKGRSVVVTTVEFRLKDTKKLCYSSRATIYIMPVVSL 172
           E+ VE  ++R GR++ V TVEF++K+T K+ Y SRAT Y  P+  L
Sbjct: 143 ELLVEGTVVRTGRNLSVVTVEFKIKETMKVTYLSRATFYHSPISKL 188



>AT1G04290.1 | chr1:1147721-1148352 REVERSE LENGTH=156
          Length = 155

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%)

Query: 68  CTLTVSPAAVNGYNTLHXXXXXXXXXXXXXXXXXXXXXDKEMFLGELSTAYLSAARLNSE 127
           C++ + P  +N    LH                            E++ +YL AA L+ E
Sbjct: 51  CSMKIPPHLLNAGKFLHGGATATLVDLIGSAVIYTAGASHSGVSVEINVSYLDAAFLDEE 110

Query: 128 VEVEAQILRKGRSVVVTTVEFRLKDTKKLCYSSRATIYIMP 168
           +E+E++ LR G++V V +VE R K T K+    R T Y  P
Sbjct: 111 IEIESKALRVGKAVAVVSVELRKKTTGKIIAQGRHTKYFAP 151



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,623,261
Number of extensions: 32668
Number of successful extensions: 85
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)