BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0446600 Os07g0446600|AK121016
         (100 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06515.1  | chr1:1990951-1991968 REVERSE LENGTH=57              54   1e-08
AT2G30942.1  | chr2:13170953-13171835 FORWARD LENGTH=57            54   2e-08

>AT1G06515.1 | chr1:1990951-1991968 REVERSE LENGTH=57
          Length = 56

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/31 (80%), Positives = 27/31 (87%)

Query: 4  MNWVSRKIHLYNVTMGLYMLDWWERCLFSIL 34
          MNWV RKI+LYNVT GLYMLDWWER LF+ L
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSL 31



>AT2G30942.1 | chr2:13170953-13171835 FORWARD LENGTH=57
          Length = 56

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/31 (80%), Positives = 27/31 (87%)

Query: 4  MNWVSRKIHLYNVTMGLYMLDWWERCLFSIL 34
          MNWV RKI+LYNVT GLYMLDWWER LF+ L
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSL 31



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.144    0.533 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,142,106
Number of extensions: 63556
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 100
Length of database: 11,106,569
Length adjustment: 70
Effective length of query: 30
Effective length of database: 9,187,449
Effective search space: 275623470
Effective search space used: 275623470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)