BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0445600 Os07g0445600|AK074000
(814 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43310.1 | chr5:17379735-17385387 REVERSE LENGTH=1238 285 1e-76
AT4G27430.1 | chr4:13718817-13722736 FORWARD LENGTH=1059 217 2e-56
AT1G61100.1 | chr1:22508831-22512122 REVERSE LENGTH=809 212 7e-55
AT3G14172.1 | chr3:4698860-4704773 REVERSE LENGTH=1271 154 1e-37
AT1G17360.1 | chr1:5947441-5951399 FORWARD LENGTH=1062 126 4e-29
AT1G72410.2 | chr1:27251535-27256246 REVERSE LENGTH=1271 124 2e-28
>AT5G43310.1 | chr5:17379735-17385387 REVERSE LENGTH=1238
Length = 1237
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 217/376 (57%), Gaps = 71/376 (18%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
M+ RLD+ FQLTPTRTR DL+V NG+ EKIA+GLL+PFLAHLK A+DQ+ KGGYSI
Sbjct: 1 MKSSTRLDSVAFQLTPTRTRCDLLVTANGKTEKIATGLLDPFLAHLKTAKDQLEKGGYSI 60
Query: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLRS 120
L+P + A WFT+GT+ERFVRFVSTPEV+ERV T+E+EI+Q+++AI IQ+N + L
Sbjct: 61 ILKPEASDNAAWFTKGTIERFVRFVSTPEVIERVYTLETEIIQIKEAIGIQNNSEMALTV 120
Query: 121 V--------------------------EDHGGKLTESNEGTRANHSPDADKAIVIYQPGS 154
V +DH K +S EG+R + +KAIV+Y+P S
Sbjct: 121 VSILGLLNTFFVVWSEVLNGILYKQVKDDHRAKKADSAEGSRPLLQLNEEKAIVLYEPDS 180
Query: 155 QPTPAVHDETTTHEENSK--------------------------------VQLLRVLETR 182
P A + +T+ +ENSK Q+++VLETR
Sbjct: 181 HPKQA--NRSTSSDENSKYTPLRELFFGFQCFSTKRVVKYLIGNMWNCIRAQVMKVLETR 238
Query: 183 KNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRKHETGQW 242
K +L+KEQ GF+ D++ LI+FA+ FGASRLM AC +F++LWK+KHETGQW
Sbjct: 239 KIMLQKEQGMAFARAVAAGFEADDMIPLISFAKTFGASRLMDACVKFMDLWKKKHETGQW 298
Query: 243 IEVEP-EAMSTHSEFPPFNPSGIVFV-GDNM---KQNTETMSVSNGEANGEDASKAEHKS 297
+E+E E M+T N SGI+F NM +N++ S ++ + NG E+
Sbjct: 299 VEIEATEVMATQPNISTMNDSGIMFANAANMPGTPENSDAKSPTDNKRNGNQ----EYVQ 354
Query: 298 GQQMGYQAAYPPWAMH 313
GQ Q Y PW +H
Sbjct: 355 GQHR--QPMYAPWPVH 368
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 154/325 (47%), Gaps = 61/325 (18%)
Query: 456 GDDYNNKDESSYGQDADQGNWNAFQSFLMR-AEEKTRSNDADMFSGEKAPPSRKKNNVNT 514
G+ YN K+ ++ G +AD G+W AFQ+FL++ A+ RS D M EK +K+
Sbjct: 480 GECYNGKERATKGTEADTGDWQAFQTFLLQDADRDERSIDHMM---EKEIRGKKRQGTGK 536
Query: 515 ADPILLAGGDSGDVYEQRGAGFDPVNGRSRAIRLQSNDELMMSGEGGRYMDGEIKEIEAG 574
DP LA G+ E G+Y + + +I G
Sbjct: 537 YDP--LAHGER---------------------------------ESGKYQERDTADIRNG 561
Query: 575 GGRYR-RGTSEDFMLYGQERSMDRRSALDPLAEARYRNP-NQVDKNGYAAADESFIIPLR 632
R RG+S+ M++ +E + S DPL + P N +DK D+S+I+
Sbjct: 562 SVTRRIRGSSDSLMVHQRENGFENSS--DPLNMNGFDTPRNGLDKRNMD--DDSYIVTRV 617
Query: 633 SGSQDNVGPEYRATIDIDVELPTNTKKTSDGKAGTQLFYEPDEL--MPERGSEDASFGYD 690
S ++D G R IDI E+ + + +DG Q+ YEP +L +PER +E S GYD
Sbjct: 618 SSARDEAGRNKRNAIDIGSEISSCYQ--TDGNERKQVNYEPHDLSLIPERETEKLSAGYD 675
Query: 691 PAMDYESNMMVRAVKVEDSNDEDVSHSNDGDVKKPEKEKIRGTKDGSDKRKKDAILRRLS 750
PA+++ S + + S + G K + K R +KD +DKRK +R+
Sbjct: 676 PALEFGSKALKKN-----------SQAAGGAKKLVKDPKSRLSKDAADKRKAPGPIRKGR 724
Query: 751 APK-TPLNDAQKRAQNMRAYKADLQ 774
K +PL++A+ RA +R +KADLQ
Sbjct: 725 PTKMSPLDEARARADKLRNFKADLQ 749
>AT4G27430.1 | chr4:13718817-13722736 FORWARD LENGTH=1059
Length = 1058
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 170/313 (54%), Gaps = 28/313 (8%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
M P RLD A+FQLTPTRTR DLV+ G EK+ASG+ PF+ HLK DQI+KGGYS+
Sbjct: 1 MDPRTRLDYALFQLTPTRTRCDLVIFSGGENEKLASGIFQPFVTHLKSVSDQISKGGYSV 60
Query: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLRS 120
TL PSS VG PWFT+ T++RFVRFV+TPEVLER T+E EI Q+ED+I + G
Sbjct: 61 TLRPSS-VGVPWFTKVTLQRFVRFVTTPEVLERSVTLEKEIEQIEDSIQANAAAIAGEAE 119
Query: 121 VEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVLE 180
+ GG T + + D V EENSKV L RVLE
Sbjct: 120 GNELGGTWTSQKSTALSKTKGETDGDTV-------------------EENSKVGLQRVLE 160
Query: 181 TRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRKHETG 240
RK L KEQ GF++D + L +FA+ FGASRL AC F++L KRK+E
Sbjct: 161 NRKAALCKEQAMAYARALVVGFELDYMDDLFSFADAFGASRLREACVNFVDLCKRKNEDR 220
Query: 241 QWIEVEPEAMST--HSEFPPFNPSGIVFVGDNMKQNTETMSVSNGEANGEDA-SKAEHKS 297
W++ + AM E SGIV G+ +N + + N DA S+ ++
Sbjct: 221 MWVD-QITAMQAFPRPELTFMGDSGIVLAGE---ENDLLNATNVKHGNSMDASSQGSFET 276
Query: 298 GQQMGYQAAYPPW 310
GQ+ Q A PW
Sbjct: 277 GQEGRAQMAM-PW 288
>AT1G61100.1 | chr1:22508831-22512122 REVERSE LENGTH=809
Length = 808
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 172/299 (57%), Gaps = 42/299 (14%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
M A LD+A+FQLTPTRTRFDLV+ +KEK+ASG+ PF++HLK A+DQI+KGGYSI
Sbjct: 1 MDSRAILDSALFQLTPTRTRFDLVLFCGSKKEKLASGIFEPFVSHLKFARDQISKGGYSI 60
Query: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSN------D 114
+L P S + WFT+ T +RFVRFV+TP ++ER T+E EILQ+E+ SIQ+N D
Sbjct: 61 SLTPPSS-HSSWFTKSTFDRFVRFVNTPAIIERFATLEKEILQIEN--SIQANEIANAAD 117
Query: 115 NLGLRSVEDHG--GKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSK 172
L L+ + G L +SNE ++ S + ++ + EE SK
Sbjct: 118 ALQLQDGSNSGDSSNLKKSNESSK-KESENGNEVV-------------------GEETSK 157
Query: 173 VQLLRVLETRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIEL 232
+QL R+LETR+ +LR+EQ G++ID++ LI FA+ FGASRL AC + EL
Sbjct: 158 IQLQRLLETRRTLLRREQAMAYARGVVAGYEIDSIDDLILFADAFGASRLREACIMYKEL 217
Query: 233 WKRKHETGQWI-EVEPEAMSTHSEFPPFNPSGIVFVG----------DNMKQNTETMSV 280
WK+KH G W+ E+ + SGI+ D+M NT+ SV
Sbjct: 218 WKKKHGDGLWMAELAAVKACAPVDMSLLGSSGIILTNEGAALSLNGTDSMPSNTDDKSV 276
>AT3G14172.1 | chr3:4698860-4704773 REVERSE LENGTH=1271
Length = 1270
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 136/253 (53%), Gaps = 39/253 (15%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
MRP LD AVFQL+P R+R +L V G EK+ASGL+ PF+AHLKVA++Q+++ SI
Sbjct: 1 MRPAIPLDYAVFQLSPKRSRCELFVSTTGNTEKLASGLVKPFVAHLKVAEEQVSREVQSI 60
Query: 61 TLEPSSGVGA-PWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLR 119
LE S A WFT+GT+ERFVRFVSTPEVLE V+ ++ E+ QLE A I
Sbjct: 61 RLEVESNKNAGTWFTKGTLERFVRFVSTPEVLELVSALDVEMSQLEAARKI--------- 111
Query: 120 SVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVL 179
+G EGT S D +TT + +K +LL+ +
Sbjct: 112 ----YG-------EGTSDQRSSAKDST----------------DTTPAADVTKKELLKAI 144
Query: 180 ETRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRKHE- 238
+ R +R++ GF+ + L FA+RFGA+RL AC++FI L +R+ E
Sbjct: 145 DLRLAAVRQDLATACNRASAAGFNPITVSELSQFADRFGANRLNEACTKFITLCQRRPEL 204
Query: 239 TGQW-IEVEPEAM 250
W + E EA+
Sbjct: 205 MSSWRVNQEEEAI 217
>AT1G17360.1 | chr1:5947441-5951399 FORWARD LENGTH=1062
Length = 1061
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 118/238 (49%), Gaps = 51/238 (21%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAK-GGYS 59
M+ D LD AVF+L+P +R +L V N +EK+ASGL+ PF+ HL+V + Q +K S
Sbjct: 1 MKADTVLDYAVFELSPKYSRCELFVSSNEEREKLASGLIEPFVNHLRVIESQASKRDQSS 60
Query: 60 ITLE-PSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGL 118
+ LE S G WFTR T+ERFV++V++PEVLERV T + E+ QLE A ++ S D+ G
Sbjct: 61 VRLEVEQSENGESWFTRRTLERFVQYVNSPEVLERVNTFDLEMSQLEAARTLYSQDDGG- 119
Query: 119 RSVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRV 178
V D T + +L+R
Sbjct: 120 -----------------------------------------VADAT-------QKELVRA 131
Query: 179 LETRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRK 236
++ R ++K+ GFD + L FA+RFGA L ACS++I L +R+
Sbjct: 132 IDLRLEAIKKDLTTAIAHASANGFDPQTVSDLQRFADRFGAHHLNEACSKYISLSQRR 189
>AT1G72410.2 | chr1:27251535-27256246 REVERSE LENGTH=1271
Length = 1270
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 46/239 (19%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQ---IAKGG 57
MR D LD VF+L+P ++ +L V N + EK+ASGL+ PF+ HLKV + + +A+
Sbjct: 1 MRSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASGLIQPFVNHLKVLEAKASPVAQSS 60
Query: 58 YSITLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLG 117
+ +E S+ WFT+ T+ERFV+FV++PE LE+V T SE+LQLE
Sbjct: 61 IRLEVEKSNT----WFTKRTLERFVQFVNSPETLEKVNTYYSEMLQLE------------ 104
Query: 118 LRSVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLR 177
A +Y S+ + + + +K +LL+
Sbjct: 105 ---------------------------AARTLYSQRSEDSKFGASDDGAAADATKKELLK 137
Query: 178 VLETRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRK 236
++ R ++K+ GFD + L FA+RF A L ACS++I LWK++
Sbjct: 138 AIDLRLEAIKKDLTTSISHASASGFDPHTVSELKQFADRFSAHHLDEACSKYISLWKQR 196
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,854,139
Number of extensions: 698104
Number of successful extensions: 1839
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1825
Number of HSP's successfully gapped: 10
Length of query: 814
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 707
Effective length of database: 8,173,057
Effective search space: 5778351299
Effective search space used: 5778351299
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)