BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0411300 Os07g0411300|Os07g0411300
(405 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393 499 e-141
AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396 421 e-118
AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386 413 e-116
AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396 240 1e-63
>AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393
Length = 392
Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/393 (63%), Positives = 295/393 (75%), Gaps = 9/393 (2%)
Query: 1 MVSTNAGGIASKQASSMAPNPGKATILALGHAFPQQLVMQDYVVDGFMRNTNCDDPELKE 60
M S +A + S++ S NPGKATILALG AFP QLVMQ+Y+VDG+ + T CDDPELK+
Sbjct: 1 MGSIDAAVLGSEKKS----NPGKATILALGKAFPHQLVMQEYLVDGYFKTTKCDDPELKQ 56
Query: 61 KLTRLCKTTTVKTRYVVMSEEILKSYPELAQEGQPTMKQRLDISNKAVTQMATEASLACV 120
KLTRLCKTTTVKTRYVVMSEEILK YPELA EG T+ QRLDI N AVT+MA EAS AC+
Sbjct: 57 KLTRLCKTTTVKTRYVVMSEEILKKYPELAIEGGSTVTQRLDICNDAVTEMAVEASRACI 116
Query: 121 RSWGGALSEITHLVYVSSSEARFPGGDLHLARALGLSPDVRRVMLAFTGCSGGVAGLRVA 180
++WG ++S+ITH+VYVSSSEAR PGGDL+LA+ LGLSPD RV+L F GCSGGVAGLRVA
Sbjct: 117 KNWGRSISDITHVVYVSSSEARLPGGDLYLAKGLGLSPDTHRVLLYFVGCSGGVAGLRVA 176
Query: 181 KGLAESCPGARVLLATSETTIVGFRPPSPDRPYDXXXXXXXXXXXXXXXXXXXPTPV-ER 239
K +AE+ PG+RVLLATSETTI+GF+PPS DRPYD P P+ E+
Sbjct: 177 KDIAENNPGSRVLLATSETTIIGFKPPSVDRPYDLVGVALFGDGAGAMIIGSDPDPICEK 236
Query: 240 PLFELHSALQRFLPDTDKTIDGRLTEEGIKFQLGRELPHIIEANVEAFCQKLMQEHPQAA 299
PLFELH+A+Q FLP+T+KTIDGRLTE+GI F+L RELP IIE NVE FC+KL+ + A
Sbjct: 237 PLFELHTAIQNFLPETEKTIDGRLTEQGINFKLSRELPQIIEDNVENFCKKLIGKAGLAH 296
Query: 300 DKLTYGDMFWAVHPGGPAILTKMEGRLGLDGGKLRASRSALRDFGNASSNTIVYVLENMV 359
Y MFWAVHPGGPAIL ++E RL L KL SR AL D+GNASSN+IVYVLE M+
Sbjct: 297 K--NYNQMFWAVHPGGPAILNRIEKRLNLSPEKLSPSRRALMDYGNASSNSIVYVLEYML 354
Query: 360 XXXXXXXXXXXXXXDCEWGLILAFGPGITFEGI 392
+ EWGLILAFGPG+TFEGI
Sbjct: 355 --EESKKVRNMNEEENEWGLILAFGPGVTFEGI 385
>AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396
Length = 395
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/383 (56%), Positives = 267/383 (69%), Gaps = 9/383 (2%)
Query: 11 SKQASSMAPNPGKATILALGHAFPQQLVMQDYVVDGFMRNTNCDDPELKEKLTRLCKTTT 70
S +++ N GKAT+LALG AFP Q+V Q+ +V+GF+R+T CDD +KEKL LCKTTT
Sbjct: 13 SSKSTRRVANAGKATLLALGKAFPSQVVPQENLVEGFLRDTKCDDAFIKEKLEHLCKTTT 72
Query: 71 VKTRYVVMSEEILKSYPELAQEGQPTMKQRLDISNKAVTQMATEASLACVRSWGGALSEI 130
VKTRY V++ EIL YPEL EG PT+KQRL+I+N+AV +MA EASL C++ WG + +I
Sbjct: 73 VKTRYTVLTREILAKYPELTTEGSPTIKQRLEIANEAVVEMALEASLGCIKEWGRPVEDI 132
Query: 131 THLVYVSSSEARFPGGDLHLARALGLSPDVRRVMLAFTGCSGGVAGLRVAKGLAESCPGA 190
TH+VYVSSSE R PGGDL+L+ LGL DV RVML F GC GGV GLRVAK +AE+ PG+
Sbjct: 133 THIVYVSSSEIRLPGGDLYLSAKLGLRNDVNRVMLYFLGCYGGVTGLRVAKDIAENNPGS 192
Query: 191 RVLLATSETTIVGFRPPSPDRPYDXXXXXXXXXXXXXXXXXXXPTPVERPLFELHSALQR 250
RVLL TSETTI+GFRPP+ RPYD P E P ELH A+Q+
Sbjct: 193 RVLLTTSETTILGFRPPNKARPYDLVGAALFGDGAAAVIIGADPRECEAPFMELHYAVQQ 252
Query: 251 FLPDTDKTIDGRLTEEGIKFQLGRELPHIIEANVEAFCQKLMQEHPQAADK-LTYGDMFW 309
FLP T I+GRLTEEGI F+LGR+LP IE N+E FC+KLM +A D+ + + DMFW
Sbjct: 253 FLPGTQNVIEGRLTEEGINFKLGRDLPQKIEENIEEFCKKLMG---KAGDESMEFNDMFW 309
Query: 310 AVHPGGPAILTKMEGRLGLDGGKLRASRSALRDFGNASSNTIVYVLENMVXXXXXXXXXX 369
AVHPGGPAIL ++E +L L+ KL +SR AL D+GN SSNTI+YV+E M
Sbjct: 310 AVHPGGPAILNRLETKLKLEKEKLESSRRALVDYGNVSSNTILYVMEYMRDELKKKGDAA 369
Query: 370 XXXXDCEWGLILAFGPGITFEGI 392
EWGL LAFGPGITFEG+
Sbjct: 370 Q-----EWGLGLAFGPGITFEGL 387
>AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386
Length = 385
Score = 413 bits (1062), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 254/371 (68%), Gaps = 7/371 (1%)
Query: 22 GKATILALGHAFPQQLVMQDYVVDGFMRNTNCDDPELKEKLTRLCKTTTVKTRYVVMSEE 81
GKAT+LALG A P +V Q+ +V+ ++R CD+ +K+KL LCK+TTVKTRY VMS E
Sbjct: 17 GKATVLALGKALPSNVVSQENLVEEYLREIKCDNLSIKDKLQHLCKSTTVKTRYTVMSRE 76
Query: 82 ILKSYPELAQEGQPTMKQRLDISNKAVTQMATEASLACVRSWGGALSEITHLVYVSSSEA 141
L YPELA EG PT+KQRL+I+N AV QMA EASL C++ WG A+ +ITHLVYVSSSE
Sbjct: 77 TLHKYPELATEGSPTIKQRLEIANDAVVQMAYEASLVCIKEWGRAVEDITHLVYVSSSEF 136
Query: 142 RFPGGDLHLARALGLSPDVRRVMLAFTGCSGGVAGLRVAKGLAESCPGARVLLATSETTI 201
R PGGDL+L+ LGLS +V+RVML F GC GG++GLRVAK +AE+ PG+RVLL TSETT+
Sbjct: 137 RLPGGDLYLSAQLGLSNEVQRVMLYFLGCYGGLSGLRVAKDIAENNPGSRVLLTTSETTV 196
Query: 202 VGFRPPSPDRPYDXXXXXXXXXXXXXXXXXXXPTPVERPLFELHSALQRFLPDTDKTIDG 261
+GFRPP+ RPY+ PT E P ELH A+Q+FLP T IDG
Sbjct: 197 LGFRPPNKARPYNLVGAALFGDGAAALIIGADPTESESPFMELHCAMQQFLPQTQGVIDG 256
Query: 262 RLTEEGIKFQLGRELPHIIEANVEAFCQKLMQEHPQAADKLTYGDMFWAVHPGGPAILTK 321
RL+EEGI F+LGR+LP IE NVE FC+KL+ + A L D+FWAVHPGGPAIL+
Sbjct: 257 RLSEEGITFKLGRDLPQKIEDNVEEFCKKLVAKAGSGA--LELNDLFWAVHPGGPAILSG 314
Query: 322 MEGRLGLDGGKLRASRSALRDFGNASSNTIVYVLENMVXXXXXXXXXXXXXXDCEWGLIL 381
+E +L L KL SR AL D+GN SSNTI Y+++ + EWGL L
Sbjct: 315 LETKLKLKPEKLECSRRALMDYGNVSSNTIFYIMDKVRDELEKKGTEGE-----EWGLGL 369
Query: 382 AFGPGITFEGI 392
AFGPGITFEG
Sbjct: 370 AFGPGITFEGF 380
>AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396
Length = 395
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 202/374 (54%), Gaps = 8/374 (2%)
Query: 22 GKATILALGHAFPQQLVMQDYVVDGFMRNTNCDD-PELKEKLTRLCKTTTVKTRYVVMSE 80
G A ILA+G A P+ V+Q D + R TN + +LKEK R+C +T++ R++ ++E
Sbjct: 20 GPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTE 79
Query: 81 EILKSYPELAQEGQPTMKQRLDISNKAVTQMATEASLACVRSWGGALSEITHLVYVSSSE 140
E LK P + P++ R DI V ++ EA++ ++ WG S+ITH+V+ ++S
Sbjct: 80 EFLKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSG 139
Query: 141 ARFPGGDLHLARALGLSPDVRRVMLAFTGCSGGVAGLRVAKGLAESCPGARVLLATSETT 200
PG D L + LGL P V+R+M+ GC G LR+AK LAE+ GARVL+ SE T
Sbjct: 140 VDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNRGARVLVVCSEIT 199
Query: 201 IVGFRPPSPDRPYDXXXXXXXXXXXXXXXXXXXP-TPV-ERPLFELHSALQRFLPDTDKT 258
V FR PS P T V E+P+FE+ SA Q LPD+D
Sbjct: 200 AVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGA 259
Query: 259 IDGRLTEEGIKFQLGRELPHIIEANVEAFCQKLMQEHPQAADKLTYGDMFWAVHPGGPAI 318
IDG L E G+ F L +++P +I N+ K + E + + +FW HPGGPAI
Sbjct: 260 IDGHLREVGLTFHLLKDVPGLISKNI----VKSLDEAFKPLGISDWNSLFWIAHPGGPAI 315
Query: 319 LTKMEGRLGLDGGKLRASRSALRDFGNASSNTIVYVLENMVXXXXXXXXXXXXXXDCEWG 378
L ++E +LGL K+RA+R L ++GN SS ++++L+ M EWG
Sbjct: 316 LDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEM-RRKSAKDGVATTGEGLEWG 374
Query: 379 LILAFGPGITFEGI 392
++ FGPG+T E +
Sbjct: 375 VLFGFGPGLTVETV 388
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,502,316
Number of extensions: 282896
Number of successful extensions: 699
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,337,553
Effective search space: 2534616112
Effective search space used: 2534616112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)