BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0282500 Os07g0282500|AK058321
(93 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04580.1 | chr1:1252212-1257510 REVERSE LENGTH=1338 101 6e-23
AT5G20960.1 | chr5:7116783-7122338 FORWARD LENGTH=1369 99 3e-22
AT2G27150.1 | chr2:11601952-11607014 FORWARD LENGTH=1333 97 1e-21
AT3G43600.1 | chr3:15512778-15517375 REVERSE LENGTH=1322 92 4e-20
AT4G34890.1 | chr4:16618736-16624983 REVERSE LENGTH=1362 48 1e-06
AT4G34900.1 | chr4:16625688-16631306 REVERSE LENGTH=1354 45 5e-06
>AT1G04580.1 | chr1:1252212-1257510 REVERSE LENGTH=1338
Length = 1337
Score = 101 bits (252), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 6/88 (6%)
Query: 2 SNVIYDL-YSL-----IMQIEGSFIQGIGFFIYEEHQTNSDGLVISNSTWDYKIPSVDTI 55
S++IYD SL + QIEG+F+QGIGFF+YEE+ TN +GLV TWDYKIP++DTI
Sbjct: 1180 SDIIYDCGKSLNPAVDLGQIEGAFVQGIGFFMYEEYTTNENGLVNEEGTWDYKIPTIDTI 1239
Query: 56 PKQFNLEVLNTGYHRTVCFLQKLLGNLP 83
PKQFN+++LN+G+H+ K G P
Sbjct: 1240 PKQFNVQILNSGHHKNRVLSSKASGEPP 1267
>AT5G20960.1 | chr5:7116783-7122338 FORWARD LENGTH=1369
Length = 1368
Score = 99.4 bits (246), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 55/73 (75%)
Query: 14 QIEGSFIQGIGFFIYEEHQTNSDGLVISNSTWDYKIPSVDTIPKQFNLEVLNTGYHRTVC 73
QIEG+F+QG+GFF+ EE NSDGLV+++STW YKIP+VDTIP+QFN+E+LN+G H+
Sbjct: 1229 QIEGAFVQGLGFFMLEEFLMNSDGLVVTDSTWTYKIPTVDTIPRQFNVEILNSGQHKNRV 1288
Query: 74 FLQKLLGNLPWFL 86
K G P L
Sbjct: 1289 LSSKASGEPPLLL 1301
>AT2G27150.1 | chr2:11601952-11607014 FORWARD LENGTH=1333
Length = 1332
Score = 97.4 bits (241), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 6/91 (6%)
Query: 2 SNVIYDL-YSL-----IMQIEGSFIQGIGFFIYEEHQTNSDGLVISNSTWDYKIPSVDTI 55
S++IYD SL + Q EG+F+QGIGFF+ EE+ T+ GLV+ TWDYKIP+VDTI
Sbjct: 1179 SDIIYDCGKSLNPAVDLGQTEGAFVQGIGFFMMEEYTTDEKGLVVQQGTWDYKIPTVDTI 1238
Query: 56 PKQFNLEVLNTGYHRTVCFLQKLLGNLPWFL 86
PK FN+E++NTG+H+ K G P L
Sbjct: 1239 PKHFNVEIVNTGHHKNRVLSSKASGEPPLLL 1269
>AT3G43600.1 | chr3:15512778-15517375 REVERSE LENGTH=1322
Length = 1321
Score = 92.4 bits (228), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 14 QIEGSFIQGIGFFIYEEHQTNSDGLVISNSTWDYKIPSVDTIPKQFNLEVLNTGYHRTVC 73
QIEGSF+QG+GFF+ EE+ + +GL++++STW YKIP+VDTIPKQFN+E+LN G H
Sbjct: 1182 QIEGSFVQGLGFFMLEEYIEDPEGLLLTDSTWTYKIPTVDTIPKQFNVEILNGGCHEKRV 1241
Query: 74 FLQKLLGNLPWFL 86
K G P L
Sbjct: 1242 LSSKASGEPPLLL 1254
>AT4G34890.1 | chr4:16618736-16624983 REVERSE LENGTH=1362
Length = 1361
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 2 SNVIYDL-YSL-----IMQIEGSFIQGIGFFIYEE-------HQTNSDGLVISNSTWDYK 48
++++ DL YSL + QIEG+F+QG+G+ EE H+ G +++ +YK
Sbjct: 1205 ADIMLDLGYSLNPAIDVGQIEGAFVQGLGWVALEELKWGDAAHKWIKPGSLLTCGPGNYK 1264
Query: 49 IPSVDTIPKQFNLEVLNTGYHRTVCFLQKLLGNLPWFL 86
IPS++ +P N+ +L + K +G P+FL
Sbjct: 1265 IPSINDMPFNLNVSLLKGNPNTKAIHSSKAVGEPPFFL 1302
>AT4G34900.1 | chr4:16625688-16631306 REVERSE LENGTH=1354
Length = 1353
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 2 SNVIYDL-YSL-----IMQIEGSFIQGIGFFIYEE-------HQTNSDGLVISNSTWDYK 48
++++ DL YSL I QIEG+F+QG+G+ EE H+ G +++ YK
Sbjct: 1197 ADIMLDLGYSLNPTIDIGQIEGAFVQGLGWVALEELKWGDAAHKWIKPGSLLTCGPGSYK 1256
Query: 49 IPSVDTIPKQFNLEVLNTGYHRTVCFLQKLLGNLP 83
IPS++ +P Q N+ +L + K +G P
Sbjct: 1257 IPSINDMPFQLNVSLLKGNPNAKAIHSSKAVGEPP 1291
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.143 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,124,091
Number of extensions: 78563
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)