BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0273900 Os07g0273900|AK065799
         (88 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14460.1  | chr3:4851990-4856264 REVERSE LENGTH=1425            47   1e-06

>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
          Length = 1424

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 1   STKNLTKLRHLDVRKKPGNVHVRMASGLGQLTDLQTVTVFNIGDDLSHCSIGDLKNLCRL 60
           S   L  LR LD+   P    V M  G+ +L  LQ ++ F IG  LS   + +LK L  L
Sbjct: 638 SIAELINLRLLDLVGTP---LVEMPPGIKKLRSLQKLSNFVIGR-LSGAGLHELKELSHL 693

Query: 61  RGHIHITGLQNITAGDDAKEANL 83
           RG + I+ LQN+    +AK+A L
Sbjct: 694 RGTLRISELQNVAFASEAKDAGL 716



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,802,835
Number of extensions: 62832
Number of successful extensions: 119
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 88
Length of database: 11,106,569
Length adjustment: 59
Effective length of query: 29
Effective length of database: 9,489,025
Effective search space: 275181725
Effective search space used: 275181725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)