BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0271600 Os07g0271600|Os07g0271600
         (262 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23280.1  | chr1:8260865-8262650 REVERSE LENGTH=304            232   1e-61

>AT1G23280.1 | chr1:8260865-8262650 REVERSE LENGTH=304
          Length = 303

 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 120/139 (86%), Gaps = 2/139 (1%)

Query: 3   DDVIWHCIRHNHCSFMAKITTGIFCRNPYNATGICNRSSCPLANSRYATIRDHDGIFYLY 62
           D+VIW  IRH HCS+MAKI TGIFCRN YN TGICNRSSCPLANSRYATIRDHDG+FYLY
Sbjct: 4   DEVIWQVIRHKHCSYMAKIETGIFCRNQYNVTGICNRSSCPLANSRYATIRDHDGVFYLY 63

Query: 63  MKTAERAHHPNKLWERVKLPRNYEKAIEVINRHLEFWPKLLVHKIKQRLTKMTQYRIRMR 122
           MKT ERAH PNKLWERVKLP NYEKA+E+I++HL +WPKLL HK+KQRLTKMTQ RIRMR
Sbjct: 64  MKTIERAHMPNKLWERVKLPVNYEKALEMIDKHLLYWPKLLQHKVKQRLTKMTQMRIRMR 123

Query: 123 KLRLKGIE--GTSLRRELK 139
           KL LK  E   T+ RR++K
Sbjct: 124 KLALKTREVVVTTPRRQIK 142



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,310,481
Number of extensions: 194482
Number of successful extensions: 492
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)