BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0264900 Os07g0264900|AK071462
         (180 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49645.1  | chr3:18403129-18404427 REVERSE LENGTH=221          105   1e-23

>AT3G49645.1 | chr3:18403129-18404427 REVERSE LENGTH=221
          Length = 220

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 106/182 (58%), Gaps = 12/182 (6%)

Query: 2   FRRPKLLTESGAISEIVKSNLSDRMRSYLEAGCTHHNETIQNMNKLHSCQEKLNDHISKA 61
            +RP ++T S  I  I+K N + R++SY+EAGC + ++  Q+   LH+    L+DH+ KA
Sbjct: 46  LQRPPIVTSSKLIENIIKKNETRRLKSYIEAGCINIHDAAQSTRALHTSLSGLSDHLIKA 105

Query: 62  KXXXXXXXXXXXDVYSTTLKACLS--SLRHMDDCPDDNSLTNIFSEDEQQSGDLLD--KA 117
           K           ++   T +A L+  S   +D    D  L  +  ++E ++  L    + 
Sbjct: 106 KNLLI-------ELERLTDEAALAIESATQLDKDSSDG-LQQVTCDEENETVQLPQGPEV 157

Query: 118 VSCASVMVLVHNMLKLDYTMQEKIVKALCIKTASSELEGYCQMWDLRPYIDDNVIQLAWQ 177
              A+++ ++++M+K +Y MQ+KIV++L +K++S ELE Y  MW LRP+++D ++  AW+
Sbjct: 158 TEYAALIAVIYSMMKQNYVMQDKIVRSLSLKSSSGELETYSLMWSLRPFVEDEIVNRAWK 217

Query: 178 FV 179
           ++
Sbjct: 218 WI 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,561,906
Number of extensions: 119855
Number of successful extensions: 335
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)