BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0264800 Os07g0264800|AK066403
         (294 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72030.1  | chr1:27110887-27111825 FORWARD LENGTH=257          164   8e-41

>AT1G72030.1 | chr1:27110887-27111825 FORWARD LENGTH=257
          Length = 256

 Score =  164 bits (414), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 93/172 (54%), Positives = 117/172 (68%), Gaps = 4/172 (2%)

Query: 114 ALVQAEAFHIPVALXXXXXXXXXKAEVLSALIYRVRNSPPDRYACLVAEEVDATSQISEA 173
           +LVQAEAFHIP+AL         +AEVLSAL+Y+++NSPPDRYACLVAE+   T  +S +
Sbjct: 87  SLVQAEAFHIPLALFDDFFFMFFQAEVLSALLYKLKNSPPDRYACLVAEQTSETETLSSS 146

Query: 174 PFEKIVGVVDCTVQNEADILKNLQGVDEYLYVSGIAVLPSFRRRKVGTALLKACEALALQ 233
               +VGVVD T Q E+ +L+   GV+EYLYVSG+AV  S RR+K+ + LLKAC+ L   
Sbjct: 147 ---SVVGVVDVTAQTESSVLRYFPGVEEYLYVSGLAVSKSQRRKKMASTLLKACDVLCYL 203

Query: 234 WRHRFMALRAYKDDDGARGLYSKAGYRVVAKDPGWV-TWVGXXXXVLMIKEL 284
           W  + +ALRAY+DD  AR LYS AGY VV  DP W  TW+G    VLM K  
Sbjct: 204 WGFKLLALRAYEDDAAARNLYSNAGYSVVETDPLWTSTWIGRKRRVLMSKRF 255



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,197,232
Number of extensions: 134838
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,419,801
Effective search space: 1650280996
Effective search space used: 1650280996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)