BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0249700 Os07g0249700|J100085L11
(60 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51780.1 | chr1:19204602-19206453 FORWARD LENGTH=436 74 2e-14
AT1G51760.1 | chr1:19199562-19201424 FORWARD LENGTH=441 73 3e-14
AT5G56650.1 | chr5:22930825-22932488 FORWARD LENGTH=439 68 1e-12
AT5G54140.1 | chr5:21965833-21967834 FORWARD LENGTH=429 67 3e-12
AT5G56660.1 | chr5:22933278-22935011 FORWARD LENGTH=440 65 9e-12
AT1G44350.1 | chr1:16834749-16838201 REVERSE LENGTH=465 64 1e-11
AT3G02875.1 | chr3:631993-633859 FORWARD LENGTH=443 62 5e-11
>AT1G51780.1 | chr1:19204602-19206453 FORWARD LENGTH=436
Length = 435
Score = 73.6 bits (179), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 12 KELVDWEHKSEESGKMHACGHDAHTTMLLGAAKLLQSQKDDLKVLTIV 59
+E+V+WEHKS+ GKMHACGHDAHTTMLLGAAKLL+ +++L+ I+
Sbjct: 116 QEMVEWEHKSKIPGKMHACGHDAHTTMLLGAAKLLKEHQEELQGTVIL 163
>AT1G51760.1 | chr1:19199562-19201424 FORWARD LENGTH=441
Length = 440
Score = 72.8 bits (177), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 12 KELVDWEHKSEESGKMHACGHDAHTTMLLGAAKLLQSQKDDLK 54
+E+V+WEHKS+ GKMHACGHDAHTTMLLGAAKLL+ +++L+
Sbjct: 116 QEMVEWEHKSKVPGKMHACGHDAHTTMLLGAAKLLKEHEEELQ 158
>AT5G56650.1 | chr5:22930825-22932488 FORWARD LENGTH=439
Length = 438
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 12 KELVDWEHKSEESGKMHACGHDAHTTMLLGAAKLLQSQKDDLK 54
+E V+WEHKS+ GKMHACGHD H MLLGAAK+LQ + L+
Sbjct: 118 QEAVEWEHKSKNPGKMHACGHDGHVAMLLGAAKILQQHRQHLQ 160
>AT5G54140.1 | chr5:21965833-21967834 FORWARD LENGTH=429
Length = 428
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 35/39 (89%)
Query: 12 KELVDWEHKSEESGKMHACGHDAHTTMLLGAAKLLQSQK 50
+ELV+W+HKS+ GKMHACGHD+HTTMLLGAAKLL +K
Sbjct: 109 QELVEWDHKSKIDGKMHACGHDSHTTMLLGAAKLLSKRK 147
>AT5G56660.1 | chr5:22933278-22935011 FORWARD LENGTH=440
Length = 439
Score = 64.7 bits (156), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 12 KELVDWEHKSEESGKMHACGHDAHTTMLLGAAKLLQSQKDDLK 54
+E V+WEHKS+ +GKMHACGHD H TMLLGAAK+L + L+
Sbjct: 119 QEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEHRHHLQ 161
>AT1G44350.1 | chr1:16834749-16838201 REVERSE LENGTH=465
Length = 464
Score = 63.9 bits (154), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 12 KELVDWEHKSEESGKMHACGHDAHTTMLLGAAKLLQSQKDDLK 54
+E V+WEH S+ +GKMHACGHDAH TMLLGAA +L++++ LK
Sbjct: 157 QEAVEWEHISKVAGKMHACGHDAHVTMLLGAAHILKAREHLLK 199
>AT3G02875.1 | chr3:631993-633859 FORWARD LENGTH=443
Length = 442
Score = 62.0 bits (149), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 32/39 (82%)
Query: 12 KELVDWEHKSEESGKMHACGHDAHTTMLLGAAKLLQSQK 50
+ELV+WE KS+ GKMHACGHD H MLLGAAKLLQ+ K
Sbjct: 120 QELVEWESKSKVDGKMHACGHDTHVAMLLGAAKLLQTTK 158
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,275,826
Number of extensions: 34490
Number of successful extensions: 94
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 7
Length of query: 60
Length of database: 11,106,569
Length adjustment: 33
Effective length of query: 27
Effective length of database: 10,201,841
Effective search space: 275449707
Effective search space used: 275449707
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)